MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-338-P2b

Family name MIR-338 (all species)
Seed CCAGCAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-338-P1  Tni-Mir-338-P2a 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Xtr-Mir-338-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 2: 2385304-2385364 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCCCUCUUCCUUCGUUGGUCACUUCCUGGAACAAUAUCCUGGUGCUGCUCGAGUGUUCCCUACAGACUCCAGCAUCAGUGAUUUUGUUGCAGGCGCUGAUCCUCCGUCUGCAGAAUUCCA
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Structure
        10          20        30         40          50        
CGCCCUCUUCCUUCGUU--     CUU    G     U   -         C--| GAGUGU 
                   GGUCA   CCUG AACAA AUC CUGGUGCUG   UC      U
                   CUAGU   GGAC UUGUU UAG GACUACGAC   AG      C
ACCUUAAGACGUCUGCCUC     CGC    G     U   U         CUC^ ACAUCC 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-338-P2b_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGGUGCUGCUCG -22
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Mature sequence

Tni-Mir-338-P2b_3p
mirBase accessionNone
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGC -61
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