MirGeneDB ID | Tgu-Mir-338-P2-as |
Family name |
MIR-338 (all species) |
Seed |
CAGCACC |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
|
Paralogues |
Tgu-Mir-338-P1
Tgu-Mir-338-P2
|
Orthologues |
Aca-Mir-338-P2
Ami-Mir-338-P2
Bta-Mir-338-P2
Bta-Mir-338-P2-as
Cfa-Mir-338-P2
Cfa-Mir-338-P2-as
Cli-Mir-338-P2
Cmi-Mir-338-P2
Cpi-Mir-338-P2
Cpi-Mir-338-P2-as
Cpo-Mir-338-P2
Dno-Mir-338-P2
Dre-Mir-338-P2a
Dre-Mir-338-P2b
Ebu-Mir-338-o2
Ete-Mir-338-P2
Ete-Mir-338-P2-as
Gga-Mir-338-P2
Gja-Mir-338-P2
Gmo-Mir-338-P2a
Gmo-Mir-338-P2b
Hsa-Mir-338-P2
Hsa-Mir-338-P2-as
Lch-Mir-338-P2
Loc-Mir-338-P2
Mal-Mir-338-P2a
Mal-Mir-338-P2b
Mdo-Mir-338-P2
Mml-Mir-338-P2
Mml-Mir-338-P2-as
Mmu-Mir-338-P2
Mmu-Mir-338-P2-as
Mun-Mir-338-P2e
Mun-Mir-338-P2f
Oan-Mir-338-P2
Ocu-Mir-338-P2
Pbv-Mir-338-P2
Rno-Mir-338-P2
Rno-Mir-338-P2-as
Sha-Mir-338-P2
Spt-Mir-338-P2
Sto-Mir-338-P2
Tni-Mir-338-P2a
Tni-Mir-338-P2b
Xla-Mir-338-P2c
Xla-Mir-338-P2d
Xtr-Mir-338-P2
|
Node of Origin (locus) |
Amniota
|
Node of Origin (family) |
Vertebrata
|
Genome context (TaeGut1_add) |
18: 1498111-1498175 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUGGCCCCCGAUGGCAGCGCGCCCCCUCCUCAACAAAAUCACUGAUGCUGGAGUCUCUGUCUGCAACUCACUCAGCACCAGGAUAUUGUUGGGCAGGAGGAGCAGUGGUGGGGCAGGAGCACUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGUGGCCCCCGAUGGCAGC--| G C C A A A G UCUCUGUC
GC CC CCU CUCAACAA AUC CUG UGCUG AG \
CG GG GGA GGGUUGUU UAG GAC ACGAC UC U
GUCACGAGGACGGGGUGGUGA^ A A C A - C - ACUCAACG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archives. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Tgu-Mir-338-P2-as_5p* |
mirBase accession | None |
Sequence |
0- UCAACAAAAUCACUGAUGCUGGAG -24
Get sequence
|
Mature sequence |
Tgu-Mir-338-P2-as_3p |
mirBase accession | None |
Sequence |
42- UCAGCACCAGGAUAUUGUUGGGC -65
Get sequence
|