MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-338-P2-as

Family name MIR-338 (all species)
Seed CAACAAA
Species Human (Homo sapiens)
MiRBase ID hsa-mir-3065
Paralogues Hsa-Mir-338-P2 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Amniota
Node of Origin (family) Vertebrata
Genome context
(hg38)
chr17: 81125886-81125948 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P2-as)
Mir-338-P2 chr17: 81125886-81125944 [-] UCSC Ensembl
Mir-338-P2-as chr17: 81125886-81125948 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCAGGUCGGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUCGCCUGAGUCAUCACUCAGCACCAGGAUAUUGUUGGAGAGGACAGCCGUGCGGCGUCUGGGGCUGACG
Get precursor sequence
Structure
        10          20        30        40        50        60  
GGCAGGUCGGGAGGCUG--| A    C            A   A   A     G   CGCCUG 
                   GC GCUG CCUCUUCAACAA AUC CUG UGCUG AGU      \
                   UG CGAC GGAGAGGUUGUU UAG GAC ACGAC UCA      A
GCAGUCGGGGUCUGCGGCG^ C    A            A   -   C     -   CUACUG 
 120       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Mature sequence

Hsa-Mir-338-P2-as_5p

mirBase accessionMIMAT0015066
Sequence
0- UCAACAAAAUCACUGAUGCUGGAGU -25
Get sequence
Proposed targets microrna.org: MIMAT0015066
TargetScanVert: hsa-miR-3065-5p
TargetMiner: hsa-miR-3065-5p
miRDB: MIMAT0015066
Co-mature sequence

Hsa-Mir-338-P2-as_3p

mirBase accessionMIMAT0015378
Sequence
40- UCAGCACCAGGAUAUUGUUGGAG -63
Get sequence
Proposed targets microrna.org: MIMAT0015378
TargetScanVert: hsa-miR-3065-3p
TargetMiner: hsa-miR-3065-3p
miRDB: MIMAT0015378