Mir-338-P2-as

MirGeneDB ID

Hsa-Mir-338-P2-as

Family name

MIR-338 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-3065

Paralogues

Hsa-Mir-338-P2

Orthologues

Aca-Mir-338-P2 Ami-Mir-338-P2 Bta-Mir-338-P2 Bta-Mir-338-P2-as Cfa-Mir-338-P2 Cfa-Mir-338-P2-as Cja-Mir-338-P2 Cli-Mir-338-P2 Cmi-Mir-338-P2 Cpi-Mir-338-P2 Cpi-Mir-338-P2-as Cpo-Mir-338-P2 Dno-Mir-338-P2 Dre-Mir-338-P2a Dre-Mir-338-P2b Ebu-Mir-338-o2 Eca-Mir-338-P2 Eca-Mir-338-P2-as Ete-Mir-338-P2 Ete-Mir-338-P2-as Gga-Mir-338-P2 Gja-Mir-338-P2 Gmo-Mir-338-P2a Gmo-Mir-338-P2b Laf-Mir-338-P2 Lch-Mir-338-P2 Loc-Mir-338-P2 Mal-Mir-338-P2a Mal-Mir-338-P2b Mdo-Mir-338-P2 Mml-Mir-338-P2 Mml-Mir-338-P2-as Mmr-Mir-338-P2 Mmu-Mir-338-P2 Mmu-Mir-338-P2-as Mun-Mir-338-P2e Mun-Mir-338-P2f Neu-Mir-338-P2 Oan-Mir-338-P2 Ocu-Mir-338-P2 Pab-Mir-338-P2 Pab-Mir-338-P2-as Pbv-Mir-338-P2 Rno-Mir-338-P2 Rno-Mir-338-P2-as Sha-Mir-338-P2 Spt-Mir-338-P2 Sto-Mir-338-P2 Tgu-Mir-338-P2 Tgu-Mir-338-P2-as Tni-Mir-338-P2a Tni-Mir-338-P2b Xla-Mir-338-P2c Xla-Mir-338-P2d Xtr-Mir-338-P2

Node of Origin (locus)

Amniota

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr17: 81125886-81125948 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-338-P2-as)

Mir-338-P2 chr17: 81125886-81125944 [-] UCSC Ensembl
Mir-338-P2-as chr17: 81125886-81125948 [+] UCSC Ensembl

Seed

CAACAAA

Precursor
(pre-Mir +30nt flank)

GGCAGGUCGGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUCGCCUGAGUCAUCACUCAGCACCAGGAUAUUGUUGGAGAGGACAGCCGUGCGGCGUCUGGGGCUGACG

Get precursor sequence

Structure

        10          20        30        40        50        60  
GGCAGGUCGGGAGGCUG--| A    C            A   A   A     G   CGCCUG 
                   GC GCUG CCUCUUCAACAA AUC CUG UGCUG AGU      \
                   UG CGAC GGAGAGGUUGUU UAG GAC ACGAC UCA      A
GCAGUCGGGGUCUGCGGCG^ C    A            A   -   C     -   CUACUG 
 120       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-338-P2-as_5p

mirBase accession

MIMAT0015066

Sequence

0- UCAACAAAAUCACUGAUGCUGGAGU -25

Get sequence

Proposed targets

microrna.org: MIMAT0015066
TargetScanVert: hsa-miR-3065-5p
TargetMiner: hsa-miR-3065-5p
miRDB: MIMAT0015066

Co-mature sequence

Hsa-Mir-338-P2-as_3p

mirBase accession

MIMAT0015378

Sequence

40- UCAGCACCAGGAUAUUGUUGGAG -63

Get sequence

Proposed targets

microrna.org: MIMAT0015378
TargetScanVert: hsa-miR-3065-3p
TargetMiner: hsa-miR-3065-3p
miRDB: MIMAT0015378