MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-338-P2-as

Family name MIR-338 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues Eca-Mir-338-P2 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Amniota
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009158.1: 1969257-1969319 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P2-as)		 Mir-338-P2-as CM009158.1: 1969257-1969319 [-] UCSC Ensembl
Mir-338-P2 CM009158.1: 1969261-1969319 [+] UCSC Ensembl
Seed CAACAAA
Precursor
(pre-Mir +30nt flank)		 
GGCAGGUCAGGAGGCUGGCAGCUGCCCUCUUCAACAAAAUCACUGAUGCUGGAGUUGCGUGUGUCAUCACUCAGCACCAGGAUAUUGUUGGGGAGGACGGCCCGUGCGGCGGCUGGGGCUGGC
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Structure
        10         20         30        40        50        60  
GGCAGGUCAGGAGGCUG-  A-|   C            A   A   A     G   UGCGUG 
                  GC  GCUG CCUCUUCAACAA AUC CUG UGCUG AGU      \
                  UG  CGGC GGAGGGGUUGUU UAG GAC ACGAC UCA      U
CGGUCGGGGUCGGCGGCG  CC^   A            A   -   C     -   CUACUG 
 120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-338-P2-as_5p
mirBase accessionNone
Sequence 
0- UCAACAAAAUCACUGAUGCUGGAGU -25
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Star sequence

Eca-Mir-338-P2-as_3p*
mirBase accessionNone
Sequence 
40- UCAGCACCAGGAUAUUGUUGGGG -63
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