MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-338-P2a

Family name MIR-338 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-338
Paralogues Tni-Mir-338-P1  Tni-Mir-338-P2b 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Xtr-Mir-338-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 3: 10941080-10941140 [+] UCSC Ensembl
Seed CCAGCAU
Precursor
(pre-Mir +30nt flank)		 
UCAGUGUUCCCCUUGCUGGAUUCUCCCUGCAACAACAUCCUGGUGCUGCCUGAGUCACUUUCACAAACUCCAGCAUCAGUGAUUUUGUUGCGGGGGGCAAACUCCUCUCACAACUAAAAGG
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Structure
        10        20          30         40        50         
UCAGUGUUCCCCUUGCUGGAUU--             C   -|        CCUGAGUCAC 
                        CUCCCUGCAACAA AUC CUGGUGCUG          U
                        GGGGGGCGUUGUU UAG GACUACGAC          U
GGAAAAUCAACACUCUCCUCAAAC             U   U^        CUCAAACACU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-338-P2a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AACAACAUCCUGGUGCUGCCUG -22
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Mature sequence

Tni-Mir-338-P2a_3p
mirBase accessionMIMAT0003008
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGC -61
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