| MirGeneDB ID | Mml-Mir-338-P2-as |
|---|
| Family name |
MIR-338 (all species) |
|---|
| Seed |
CAACAAA |
|---|
| Species |
Rhesus monkey (Macaca mulatta) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Mml-Mir-338-P2
|
|---|
| Orthologues |
Aca-Mir-338-P2
Ami-Mir-338-P2
Bta-Mir-338-P2
Bta-Mir-338-P2-as
Cfa-Mir-338-P2
Cfa-Mir-338-P2-as
Cli-Mir-338-P2
Cmi-Mir-338-P2
Cpi-Mir-338-P2
Cpi-Mir-338-P2-as
Cpo-Mir-338-P2
Dno-Mir-338-P2
Dre-Mir-338-P2a
Dre-Mir-338-P2b
Ebu-Mir-338-o2
Ete-Mir-338-P2
Ete-Mir-338-P2-as
Gga-Mir-338-P2
Gja-Mir-338-P2
Gmo-Mir-338-P2a
Gmo-Mir-338-P2b
Hsa-Mir-338-P2
Hsa-Mir-338-P2-as
Lch-Mir-338-P2
Loc-Mir-338-P2
Mal-Mir-338-P2a
Mal-Mir-338-P2b
Mdo-Mir-338-P2
Mmu-Mir-338-P2
Mmu-Mir-338-P2-as
Mun-Mir-338-P2e
Mun-Mir-338-P2f
Oan-Mir-338-P2
Ocu-Mir-338-P2
Pbv-Mir-338-P2
Rno-Mir-338-P2
Rno-Mir-338-P2-as
Sha-Mir-338-P2
Spt-Mir-338-P2
Sto-Mir-338-P2
Tgu-Mir-338-P2
Tgu-Mir-338-P2-as
Tni-Mir-338-P2a
Tni-Mir-338-P2b
Xla-Mir-338-P2c
Xla-Mir-338-P2d
Xtr-Mir-338-P2
|
|---|
| Node of Origin (locus) |
Amniota
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(rheMac8_trace) |
chr16: 74986914-74986976 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGCAGGUCGGGAGGCUGGCAGCUACCCUCUUCAACAAAAUCACUGAUGCUGGAGUCACCUGAGUCAUCACUCAGCACCAGGAUAUUGUUGGAGAGGACGGCCGUGCGGCAUCUGGGGCUGGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGCAGGUCGGGAGGCUG--| A AC A A A G CACCUG
GC GCU CCUCUUCAACAA AUC CUG UGCUG AGU \
UG CGG GGAGAGGUUGUU UAG GAC ACGAC UCA A
GUGGUCGGGGUCUACGGCG^ C CA A - C - CUACUG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Mml-Mir-338-P2-as_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCAACAAAAUCACUGAUGCUGGAGU -25
Get sequence
|
|---|
| Star sequence |
Mml-Mir-338-P2-as_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- UCAGCACCAGGAUAUUGUUGGAG -63
Get sequence
|
|---|
