MirGeneDB 2.1
MirGeneDB ID

Ebu-Mir-338-o2

Family name MIR-338 (all species)
Seed CCAGCAU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-338-o1  Ebu-Mir-338-P3 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) E. burgeri
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)		 FYBX02009662.1: 114366-114431 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGUAAAGACCUUUGACCAUGCCUUGGCAACAACAUCCUGACGCUGCUUGAGUGUGUGCUGCGGUCUCUACUCCAGCAUCAGUGAUUUUGUUCCCAGUGCUGGAACUUUCCUACACUUGCACUU
Get precursor sequence
Structure
        10           20        30         40        50        60   
UUUUGUAAAGACCUUUGA---|  U  C    C     C   -    C    CUU    GUGUGCU 
                     CCA GC UUGG AACAA AUC CUGA GCUG   GAGU       G
                     GGU CG GACC UUGUU UAG GACU CGAC   CUCA       C
UUCACGUUCACAUCCUUUCAA^  -  U    C     U   U    A    ---    UCUCUGG 
    120       110        100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Ebu-Mir-338-o2_5p*
mirBase accessionNone
Sequence 
0- AACAACAUCCUGACGCUGCUUGAGU -25
Get sequence
Mature sequence

Ebu-Mir-338-o2_3p
mirBase accessionNone
Sequence 
43- UCCAGCAUCAGUGAUUUUGUUCC -66
Get sequence