| MirGeneDB ID | Ebu-Mir-338-P3 |
|---|
| Family name |
MIR-338 (all species) |
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| Seed |
CCAGUGU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-338-o1
Ebu-Mir-338-o2
|
|---|
| Orthologues |
Pma-Mir-338-o3
Pma-Mir-338-P3
|
|---|
| Node of Origin (locus) |
Cyclostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02010050.1: 36039-36101 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CAUCGAGAAAGAUCUGUCAGCAGCCCUGGGAGCAAAACACAGUAACUGACGAGUCCGCCAUGUCGAUAACUCCAGUGUCUGUGAUUUUGUUCUCCAGUGCUUUGCACAACUGCCUCACUAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAUCGAGAAAGAUCUGUCA -- C - -| UA AC CCGCCA
GC AGC CUGG GAGCAAAA CACAG ACUG GAGU U
CG UCG GACC CUUGUUUU GUGUC UGAC CUCA G
AGAAUCACUCCGUCAACA- UU U U A^ UG -- AUAGCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Ebu-Mir-338-P3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCAAAACACAGUAACUGACGAGU -24
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-338-P3_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UCCAGUGUCUGUGAUUUUGUUCU -63
Get sequence
|
|---|
