MirGeneDB 3.0

24 microRNA genes with node of origin Cyclostomata
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Ebu-Mir-192-o1 None MIR-192 UGACCUA None None FYBX02009777.1 1718365 1718423 - Cyclostomata Vertebrata No 1
Pma-Mir-192-o1 None MIR-192 UGACCUA None None NC_046074.1 5108757 5108818 + Cyclostomata Vertebrata No 1
Ebu-Mir-194-o1 None MIR-194 GUAACAG None None FYBX02009777.1 1718594 1718650 - Cyclostomata Vertebrata No
Pma-Mir-194-o1 None MIR-194 GUAACAG None None NC_046074.1 5107960 5108016 + Cyclostomata Vertebrata No 1
Pma-Mir-216-P2a1 pma-mir-216b MIR-216 AAUCUCU MIMAT0019527 None NC_046074.1 1955059 1955119 - Cyclostomata Nephrozoa Unknown 1
Ebu-Mir-216-P2a2 None MIR-216 AAUCUCU None None FYBX02005270.1 1704272 1704341 - Cyclostomata Nephrozoa No
Pma-Mir-216-P2a2 None MIR-216 AAUCUCU None None NC_046097.1 6164884 6164943 - Cyclostomata Nephrozoa Unknown 1
Ebu-Mir-216-P2b1 None MIR-216 AAUCUCA None None FYBX02010123.1 688200 688261 + Cyclostomata Nephrozoa Unknown 1
Pma-Mir-216-P2b1 pma-mir-216a MIR-216 AAUCUCA MIMAT0019525 MIMAT0019526 NC_046074.1 1952348 1952411 - Cyclostomata Nephrozoa Unknown
Pma-Mir-217-P1 pma-mir-217a MIR-217 ACUGCAU MIMAT0019528 None NC_046074.1 1950981 1951039 - Cyclostomata Chordata Unknown 1
Ebu-Mir-217-P1 V None MIR-217 ACUGCAU None None FYBX02010123.1 688386 688444 + Cyclostomata Chordata 2 Unknown 1
Ebu-Mir-217-P2 V None MIR-217 ACUGCAU None None FYBX02005270.1 1698342 1698399 - Cyclostomata Chordata 2 Unknown 1
Pma-Mir-217-P2 V None MIR-217 ACUGCAU None None NC_046097.1 6160240 6160298 - Cyclostomata Chordata 2 Unknown
Ebu-Mir-338-P3 None MIR-338 CCAGUGU None None FYBX02010050.1 36039 36101 + Cyclostomata Vertebrata No 1
Pma-Mir-338-P3 pma-mir-338b MIR-338 CCAGUGU None MIMAT0019540 NC_046071.1 19740631 19740695 + Cyclostomata Vertebrata No
Ebu-Mir-4542 None MIR-4542 CAAGUGC None None FYBX02010059.1 2027000 2027059 - Cyclostomata Cyclostomata No 1
Pma-Mir-4542 pma-mir-4542 MIR-4542 CAAGUGC MIMAT0019570 MIMAT0019571 NC_046092.1 9705019 9705078 - Cyclostomata Cyclostomata Yes 1
Ebu-Mir-4543 None MIR-4543 AUAGGUC None None FYBX02010165.1 3341649 3341709 + Cyclostomata Cyclostomata No 1 1
Pma-Mir-4543 pma-mir-4543 MIR-4543 AUAGGUC MIMAT0019572 None NC_046098.1 11451420 11451481 - Cyclostomata Cyclostomata Yes 1 1
Ebu-Mir-4544 None MIR-4544 ACCCUAU None None FYBX02009703.1 1475704 1475762 + Cyclostomata Cyclostomata Unknown 1 1 1
Pma-Mir-4544 pma-mir-4544 MIR-4544 ACCCUAU MIMAT0019573 MIMAT0019574 NC_046084.1 9159188 9159246 - Cyclostomata Cyclostomata Yes 1 1
Ebu-Mir-4545-P1 V None MIR-4545 ACAGCAU None None FYBX02010063.1 1316499 1316558 - Cyclostomata Cyclostomata 2 No 1
Pma-Mir-4545-P1 V pma-mir-4545 MIR-4545 ACAGCAU MIMAT0019575 MIMAT0019576 NC_046071.1 13966325 13966381 + Cyclostomata Cyclostomata 2 Yes 1
Ebu-Mir-4545-P2 None MIR-4545 ACAGCAU None None FYBX02006480.1 741413 741473 + Cyclostomata Cyclostomata No 1

(red - mature/co-mature, blue - star)

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