MirGeneDB ID | Pma-Mir-216-P2b1 |
Family name |
MIR-216 (all species) |
Species |
Sea Lamprey (Petromyzon marinus) |
MiRBase ID |
pma-mir-216a
|
Paralogues |
Pma-Mir-216-P2a1
Pma-Mir-216-P2a2
|
Orthologues |
Aae-Mir-216-P2
Aca-Mir-216-P2b
Aga-Mir-216-P2
Ami-Mir-216-P2b
Asu-Mir-216-P2
Ava-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bko-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Bta-Mir-216-P2b
Cbr-Mir-216-P2
Cel-Mir-216-P2
Cfa-Mir-216-P2b
Cja-Mir-216-P2b
Cli-Mir-216-P2b
Cmi-Mir-216-P2b
Cpi-Mir-216-P2b
Cpo-Mir-216-P2b
Csc-Mir-216-P2
Dan-Mir-216-P2
Dlo-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dno-Mir-216-P2b
Dpu-Mir-216-P2
Dre-Mir-216-P2b
Dsi-Mir-216-P2
Dya-Mir-216-P2
Ebu-Mir-216-P2b1
Eca-Mir-216-P2b
Ete-Mir-216-P2b
Gga-Mir-216-P2b
Gja-Mir-216-P2b
Gmo-Mir-216-P2b
Hme-Mir-216-P2
Hsa-Mir-216-P2b
Isc-Mir-216-P2
Laf-Mir-216-P2b
Lch-Mir-216-P2b
Loc-Mir-216-P2b
Mal-Mir-216-P2b
Mdo-Mir-216-P2b
Mml-Mir-216-P2b
Mmr-Mir-216-P2b
Mmu-Mir-216-P2b
Mun-Mir-216-P2b
Neu-Mir-216-P2b
Oan-Mir-216-P2b
Ocu-Mir-216-P2b
Pab-Mir-216-P2b
Pbv-Mir-216-P2b
Pca-Mir-216-P2
Rno-Mir-216-P2b
Sha-Mir-216-P2b
Spt-Mir-216-P2b
Sto-Mir-216-P2b
Tca-Mir-216-P2
Tgu-Mir-216-P2b
Tni-Mir-216-P2b
Tur-Mir-216-P2
Xtr-Mir-216-P2b
|
Node of Origin (locus) |
Cyclostomata
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046074.1: 1952348-1952411 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-216-P2b1) |
Mir-217-P1
NC_046074.1: 1950981-1951039 [-]
UCSC
Ensembl
Mir-216-P2b1
NC_046074.1: 1952348-1952411 [-]
UCSC
Ensembl
Mir-216-P2a1
NC_046074.1: 1955059-1955119 [-]
UCSC
Ensembl
|
Seed |
AAUCUCA |
Precursor (pre-Mir +30nt flank) |
GCUGGUGAAGGCUCUGCUGUGAUCUCGGCCCAAUCUCAGCUGGCAACUGUGAGUGCUGUGUUGGGAAUUGCCCACGGGAGUCACUGGGAUUAGGCUGUGAGCAGCACUUUGUGCAAAUCAACUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGGUGAAGGCUCUGC- GA-| U C C AA A UGCUGUGU
UGU UC CGGCC AAUCUCAG UGGC CUGUG G \
ACG AG GUCGG UUAGGGUC ACUG GGCAC C U
GUCAACUAAACGUGUUUC ACG^ U A - AG C GUUAAGGG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
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Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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Mature sequence |
Pma-Mir-216-P2b1_5p |
mirBase accession | MIMAT0019525 |
Sequence |
0- CAAUCUCAGCUGGCAACUGUGAG -23
Get sequence
|
Star sequence |
Pma-Mir-216-P2b1_3p* |
mirBase accession | MIMAT0019526 |
Sequence |
42- CACGGGAGUCACUGGGAUUAGG -64
Get sequence
|