Mir-216-P2b

MirGeneDB ID

Mml-Mir-216-P2b

Family name

MIR-216 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-216a

Paralogues

Mml-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014348.1: 52670838-52670899 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-216-P2a CM014348.1: 52658963-52659024 [+] UCSC Ensembl
Mir-216-P2b CM014348.1: 52670838-52670899 [+] UCSC Ensembl
Mir-217-v2 CM014348.1: 52676764-52676824 [+] UCSC Ensembl
Mir-217-v1 CM014348.1: 52676765-52676823 [+] UCSC Ensembl

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

AGGUCUAACGCGGAUGGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAAUCCCUCACAGUGGUCUCUGGGAUUACGCUAAACAGAGCAAUUUCCUUGCCCUCGCGA

Get precursor sequence

Structure

        10             20        30        40        50        60 
AGGUCUAACGCGGAUGG-----|   GAG     U         CU   A        AUGUUCA 
                      CUGU   UUGGC UAAUCUCAG  GGC ACUGUGAG       \
                      GACA   AAUCG AUUAGGGUC  CUG UGACACUC       U
AGCGCUCCCGUUCCUUUAACGA^   ---     C         U-   G        CCUAACA 
120       110       100           90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-216-P2b_5p

mirBase accession

MIMAT0006242

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-216a-5p

Co-mature sequence

Mml-Mir-216-P2b_3p

mirBase accession

MIMAT0026848

Sequence

40- CACAGUGGUCUCUGGGAUUACG -62

Get sequence

Proposed targets

TargetScanVert: mml-miR-216a-3p