Mir-216-P2b

MirGeneDB ID

Oan-Mir-216-P2b

Family name

MIR-216 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-216a

Paralogues

Oan-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041736.1: 56809006-56809067 [+]

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-216-P2a NC_041736.1: 56800547-56800608 [+]
Mir-216-P2b NC_041736.1: 56809006-56809067 [+]
Mir-217-v2 NC_041736.1: 56814320-56814380 [+]
Mir-217-v1 NC_041736.1: 56814321-56814379 [+]

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

AGAUCGACAUCGGAUGGCUGUGAAUCGGCUUAAUCUCAGCUGGCAACUGUGAGAUGCUAACCAAUUCUCCCACAGUGGCAUCUGGGAUUAUGCUAAACACAGCAAUUUCUUACCUCUGAGAA

Get precursor sequence

Structure

        10           20        30        40        50        60 
AGAUCGACAUCGGAUGG---|    AAUC   U         C  G  A     A AUGCUAA 
                    CUGUG    GGC UAAUCUCAG UG CA CUGUG G       \
                    GACAC    UCG AUUAGGGUC AC GU GACAC C       C
AAGAGUCUCCAUUCUUUAAC^    AAA-   U         U  G  -     C UCUUAAC 
120       110       100         90        80         70