Mir-216-P2b

MirGeneDB ID

Bta-Mir-216-P2b

Family name

MIR-216 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-216a

Paralogues

Bta-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037338.1: 38640719-38640780 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-217-v2 NC_037338.1: 38628468-38628528 [-] UCSC Ensembl
Mir-217-v1 NC_037338.1: 38628469-38628527 [-] UCSC Ensembl
Mir-216-P2b NC_037338.1: 38640719-38640780 [-] UCSC Ensembl
Mir-216-P2a NC_037338.1: 38657092-38657153 [-] UCSC Ensembl

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

AGGUCUAACCUGGAUGGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGUUCAUACAGUCCUCCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCAAUCUCCUUGCCCUCAUGG

Get precursor sequence

Structure

        10             20        30        40        50         60
AGGUCUAACCUGGAUGG-----|   GAG     U         CU   A      -  AUGUUC 
                      CUGU   UUGGC UAAUCUCAG  GGC ACUGUG AG      A
                      GACA   AAUCG AUUAGGGUC  CUG UGACAC UC      U
GGUACUCCCGUUCCUCUAACGA^   ---     U         U-   G      C  CUGACA 
120       110       100           90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-216-P2b_5p

mirBase accession

MIMAT0009265

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-216a

Star sequence

Bta-Mir-216-P2b_3p*

mirBase accession

None

Sequence

40- CACAGUGGUCUCUGGGAUUAUG -62

Get sequence