Mir-216-P2b

MirGeneDB ID

Cpo-Mir-216-P2b

Family name

MIR-216 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-216a

Paralogues

Cpo-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(cavPor3)

scaffold_48: 8647413-8647474 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-216-P2a scaffold_48: 8638120-8638180 [+] UCSC
Mir-216-P2b scaffold_48: 8647413-8647474 [+] UCSC
Mir-217-v2 scaffold_48: 8653829-8653889 [+] UCSC
Mir-217-v1 scaffold_48: 8653830-8653888 [+] UCSC

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

AGGUCUAAUCUGGAUGGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGAUGCUCAUGUAAUCCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCAAUUUCCUUAACCUGGUGG

Get precursor sequence

Structure

        10             20        30        40        50        60 
AGGUCUAAUCUGGAUGG-----|   GAG     U         CU   A        AUGCUCA 
                      CUGU   UUGGC UAAUCUCAG  GGC ACUGUGAG       \
                      GACA   AAUCG AUUAGGGUC  CUG UGACACUC       U
GGUGGUCCAAUUCCUUUAACGA^   ---     U         U-   G        CCUAAUG 
120       110       100           90         80        70