MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-216-P2b

Family name MIR-216 (all species)
Seed AAUCUCA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-216a
Paralogues Pbv-Mir-216-P2a 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2b  Ami-Mir-216-P2b  Asu-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2b  Cgi-Mir-216-P2  Cli-Mir-216-P2b  Cmi-Mir-216-P2b  Cpi-Mir-216-P2b  Cpo-Mir-216-P2b  Dan-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2b1  Efe-Mir-216-P2  Ete-Mir-216-P2b  Gga-Mir-216-P2b  Gja-Mir-216-P2b  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Lch-Mir-216-P2b  Lgi-Mir-216-P2  Loc-Mir-216-P2b  Mal-Mir-216-P2b  Mdo-Mir-216-P2b  Mml-Mir-216-P2b  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Oan-Mir-216-P2b  Ocu-Mir-216-P2b  Pma-Mir-216-P2b1  Rno-Mir-216-P2b  Sha-Mir-216-P2b  Spt-Mir-216-P2b  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2b  Tni-Mir-216-P2b  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4  Xtr-Mir-216-P2b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953947.1: 195087-195148 [+]
Clustered miRNAs
(< 50kb from Mir-216-P2b)
Mir-216-P2a KE953947.1: 188163-188223 [+]
Mir-216-P2b KE953947.1: 195087-195148 [+]
Mir-217-v2 KE953947.1: 202071-202131 [+]
Mir-217-v1 KE953947.1: 202072-202130 [+]
Precursor
(pre-Mir +30nt flank)
AGGUCUUCUACAGAUGGCUGUGAAUUGGUUUAAUCUCAGCUGGCAACUGUGAGCAGUUAAUAAAUUCUCUCACAGUGGUAUCUGGGAUUAUGCUAAACGCAGCAAUUUCCUUGCUUUUAUGG
Get precursor sequence
Structure
        10           20        30        40        50        60 
AGGUCUUCUACAGAUGG---|    AA     U         CUG  A        CAGUUAA 
                    CUGUG  UUGGU UAAUCUCAG   GC ACUGUGAG       \
                    GACGC  AAUCG AUUAGGGUC   UG UGACACUC       U
GGUAUUUUCGUUCCUUUAAC^    A-     U         UA-  G        UCUUAAA 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Pbv-Mir-216-P2b_5p

mirBase accessionMIMAT0039022
Sequence
0- UAAUCUCAGCUGGCAACUGUGAG -23
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Star sequence

Pbv-Mir-216-P2b_3p*

mirBase accessionMIMAT0039023
Sequence
40- CACAGUGGUAUCUGGGAUUAUG -62
Get sequence