Mir-216-P2

MirGeneDB ID

Bla-Mir-216-P2

Family name

MIR-216 (all species)

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aca-Mir-216-P2b Aga-Mir-216-P2 Agr-Mir-216-P2c Agr-Mir-216-P2d Ami-Mir-216-P2a Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cfa-Mir-216-P2b Cja-Mir-216-P2a Cja-Mir-216-P2b Cli-Mir-216-P2a Cli-Mir-216-P2b Cmi-Mir-216-P2a Cmi-Mir-216-P2b Cpi-Mir-216-P2a Cpi-Mir-216-P2b Cpo-Mir-216-P2a Cpo-Mir-216-P2b Csc-Mir-216-P2 Cte-Mir-216-P2c Cte-Mir-216-P2d Dan-Mir-216-P2 Dgr-Mir-216-P2c Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2a Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Eba-Mir-216-P2c Ebu-Mir-216-P2a2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2a Eca-Mir-216-P2b Efe-Mir-216-P2c Esc-Mir-216-P2d Ete-Mir-216-P2a Ete-Mir-216-P2b Gga-Mir-216-P2a Gga-Mir-216-P2b Gja-Mir-216-P2a Gja-Mir-216-P2b Gmo-Mir-216-P2a Gmo-Mir-216-P2b Hme-Mir-216-P2 Hru-Mir-216-P2d Hsa-Mir-216-P2a Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2a Laf-Mir-216-P2b Lan-Mir-216-P2d1 Lan-Mir-216-P2d2 Lch-Mir-216-P2a Lch-Mir-216-P2b Lgi-Mir-216-P2d Lhy-Mir-216-P2c Lhy-Mir-216-P2d Llo-Mir-216-P2c Llo-Mir-216-P2d Loc-Mir-216-P2a Loc-Mir-216-P2b Lpo-Mir-216-P2g Lpo-Mir-216-P2h Lpo-Mir-216-P2i Mal-Mir-216-P2a Mal-Mir-216-P2b Mdo-Mir-216-P2a Mdo-Mir-216-P2b Mgi-Mir-216-P2d Mml-Mir-216-P2a Mml-Mir-216-P2b Mmr-Mir-216-P2a Mmr-Mir-216-P2b Mmu-Mir-216-P2a Mmu-Mir-216-P2b Mom-Mir-216-P2c Mom-Mir-216-P2d Mun-Mir-216-P2b Neu-Mir-216-P2a Neu-Mir-216-P2b Npo-Mir-216-P2c Npo-Mir-216-P2d Oan-Mir-216-P2a Oan-Mir-216-P2b Obi-Mir-216-P2c Obi-Mir-216-P2d Ocu-Mir-216-P2a Ocu-Mir-216-P2b Ofu-Mir-216-P2c Ofu-Mir-216-P2d Ovu-Mir-216-P2c Ovu-Mir-216-P2d Pab-Mir-216-P2a Pab-Mir-216-P2b Pau-Mir-216-P2c Pau-Mir-216-P2d Pbv-Mir-216-P2a Pbv-Mir-216-P2b Pca-Mir-216-P2 Pcr-Mir-216-P2o1-v1 Pcr-Mir-216-P2o2 Pdu-Mir-216-P2d Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Pma-Mir-216-P2b1 Pve-Mir-216-P2d Rno-Mir-216-P2a Rno-Mir-216-P2b Rph-Mir-216-P2d Sha-Mir-216-P2a Sha-Mir-216-P2b Sme-Mir-216-P2e Sme-Mir-216-P2f Snu-Mir-216-P2c Snu-Mir-216-P2d Spt-Mir-216-P2a Spt-Mir-216-P2b Sto-Mir-216-P2a Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2a Tgu-Mir-216-P2b Tni-Mir-216-P2a Tni-Mir-216-P2b Tur-Mir-216-P2 War-Mir-216-P2c Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(BraLan2)

Sc0000230: 137127-137187 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2)

Mir-216-P2 Sc0000230: 137127-137187 [+] Ensembl
Mir-217 Sc0000230: 138105-138161 [+] Ensembl

Seed

ACGGUGC

Precursor
(pre-Mir +30nt flank)

UGUGGGUGUGACCCUGUAUGGAUGGUUGUGUAAUCUCAGCUGGCAACUGUGAGUCUAACUUCACAUCCUCACGGUGCAAGCUGGGAUCGCUCAAACUUCUCAGCUCUGCUUCAGUCCUUCU

Get precursor sequence

Structure

        10         20         30        40        50        60
UGUGGGUGUGACCCUGUA-   AU    GU-|UA         G   A       UCUAAC 
                   UGG  GGUU   G  AUCUCAGCU GCA CUGUGAG      U
                   ACU  UCAA   C  UAGGGUCGA CGU GGCACUC      U
UCUUCCUGACUUCGUCUCG   CU    ACU^GC         A   -       CUACAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Em	Em	Em	Em

Star sequence

Bla-Mir-216-P2_5p*

mirBase accession

None

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Mature sequence

Bla-Mir-216-P2_3p

mirBase accession

None

Sequence

39- CACGGUGCAAGCUGGGAUCGCU -61

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