MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-216-P2a

Family name MIR-216 (all species)
Seed AAUCUCU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Ami-Mir-216-P2a  Asu-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cgi-Mir-216-P2  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Cpo-Mir-216-P2a  Dan-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Efe-Mir-216-P2  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Lch-Mir-216-P2a  Lgi-Mir-216-P2  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pbv-Mir-216-P2a  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015252653.1: 213-273 [+]
Precursor
(pre-Mir +30nt flank)
CCUCUGCCAGGAUUCAAGACACAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCUCUACAGAAAUCUCACAGUUACCAGUAGAGGUUCUACAAUCUGGAGUACAGUGCCGGUUGCGCAG
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Structure
        10        20          30        40        50        60
CCUCUGCCAGGAUUCAAG  A-    C  -|   A       A  C  A     UGUCUCU 
                  AC  CAGA UG GGAA UCUCUGC GG AA UGUGA       A
                  UG  GUCU AC UCUU GGAGAUG CC UU ACACU       C
GACGCGUUGGCCGUGACA  AG    A  A^   -       A  A  G     CUAAAGA 
 .       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
-   +
To
Mature sequence

Gja-Mir-216-P2a_5p
mirBase accessionNone
Sequence 
0- AAAUCUCUGCAGGCAAAUGUGA -22
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Star sequence

Gja-Mir-216-P2a_3p* (predicted)
mirBase accessionNone
Sequence 
40- ACAGUUACCAGUAGAGGUUCU -61
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