Mir-216-P2a2

MirGeneDB ID

Pma-Mir-216-P2a2

Family name

MIR-216 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-216-P2a1 Pma-Mir-216-P2b1

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aga-Mir-216-P2 Ami-Mir-216-P2a Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cja-Mir-216-P2a Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Eca-Mir-216-P2a Ete-Mir-216-P2a Gga-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Hsa-Mir-216-P2a Isc-Mir-216-P2 Laf-Mir-216-P2a Lch-Mir-216-P2a Loc-Mir-216-P2a Mal-Mir-216-P2a Mdo-Mir-216-P2a Mml-Mir-216-P2a Mmr-Mir-216-P2a Mmu-Mir-216-P2a Neu-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pab-Mir-216-P2a Pbv-Mir-216-P2a Pca-Mir-216-P2 Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Sto-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a Tur-Mir-216-P2

Node of Origin (locus)

Cyclostomata

Node of Origin (family)

Nephrozoa

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046097.1: 6164884-6164943 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2a2)

Mir-217-P2-v2 NC_046097.1: 6160239-6160299 [-] UCSC Ensembl
Mir-217-P2-v1 NC_046097.1: 6160240-6160298 [-] UCSC Ensembl
Mir-216-P2a2 NC_046097.1: 6164884-6164943 [-] UCSC Ensembl

Seed

AAUCUCU

Precursor
(pre-Mir +30nt flank)

CUUCGACCUCGCCGUCCGCUGCCUCCUGGGAAAUCUCUGCAGGCAACUGUGAUGCAGACUCGGACACACGUUGGCCUGGAGAGGUUCCACAGGCAGCAGCACUGUCGCCAUGGCAACCGG

Get precursor sequence

Structure

        10           20         30        40          50        
CUUCGACCUCGCCGUCC---     CU    -  A       G    -    -|   AUGCAG 
                    GCUGC  CCUG GG AAUCUCU CAGG CAAC UGUG      \
                    CGACG  GGAC CC UUGGAGA GUCC GUUG ACAC      A
GGCCAACGGUACCGCUGUCA     AC    A  -       G    G    C^   AGGCUC 
.       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-216-P2a2_5p

mirBase accession

None

Sequence

0- AAAUCUCUGCAGGCAACUGUGAUG -24

Get sequence

Star sequence

Pma-Mir-216-P2a2_3p*

mirBase accession

None

Sequence

36- CACGUUGGCCUGGAGAGGUUCCAC -60

Get sequence