MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-216-P2a

Family name MIR-216 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-216b
Paralogues Dre-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aga-Mir-216-P2  Ami-Mir-216-P2a  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cja-Mir-216-P2a  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Cpo-Mir-216-P2a  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Eca-Mir-216-P2a  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Laf-Mir-216-P2a  Lch-Mir-216-P2a  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmr-Mir-216-P2a  Mmu-Mir-216-P2a  Neu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pab-Mir-216-P2a  Pbv-Mir-216-P2a  Pca-Mir-216-P2  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a  Tur-Mir-216-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(danRer11)		 chr22: 28780265-28780323 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2a)		 Mir-217-v1 chr22: 28779730-28779788 [-] UCSC Ensembl
Mir-217-v2 chr22: 28779730-28779789 [-] UCSC Ensembl
Mir-216-P2b chr22: 28779961-28780023 [-] UCSC Ensembl
Mir-216-P2a chr22: 28780265-28780323 [-] UCSC Ensembl
Seed AAUCUCU
Precursor
(pre-Mir +30nt flank)		 
AAACUGCUAAAGAUGUAUAAACUGACUGGGUAAUCUCUGCAGGCAACUGUGAUGUGAUUACAGUCUCACAUUGACCUGAAGAGGUUGAGCAGUCUGUUUACACCCAAAACCUGCGAGAA
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Structure
        10          20        30        40         50         
AAACUGCUAAAGAUGUA--     U     GG        G    -|  C     UGUGAU 
                   UAAAC GACUG  UAAUCUCU CAGG CAA UGUGA      \
                   AUUUG CUGAC  GUUGGAGA GUCC GUU ACACU      U
AAGAGCGUCCAAAACCCAC     U     GA        A    A^  -     CUGACA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-216-P2a_5p
mirBase accessionMIMAT0001867
Sequence 
0- UAAUCUCUGCAGGCAACUGUGA -22
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Proposed targets TargetScanFish: dre-miR-216b
Star sequence

Dre-Mir-216-P2a_3p*
mirBase accessionNone
Sequence 
37- ACAUUGACCUGAAGAGGUUGAG -59
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