MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-216-P2a

Family name MIR-216 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-216-P2b 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aga-Mir-216-P2  Ami-Mir-216-P2a  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cja-Mir-216-P2a  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Cpo-Mir-216-P2a  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Eca-Mir-216-P2a  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Laf-Mir-216-P2a  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmr-Mir-216-P2a  Mmu-Mir-216-P2a  Neu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pab-Mir-216-P2a  Pbv-Mir-216-P2a  Pca-Mir-216-P2  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a  Tur-Mir-216-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(LatCha1_add)		 JH127673.1: 301830-301893 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2a)		 Mir-216-P2a JH127673.1: 301830-301893 [+] Ensembl
Mir-216-P2b JH127673.1: 312337-312398 [+] Ensembl
Mir-217 JH127673.1: 312721-312779 [+] Ensembl
Seed AAUCUCU
Precursor
(pre-Mir +30nt flank)		 
UCUUCACCUACAGACAAGCAGCAGACUGUCUAAUCUCUGCAGGCAAUUGUGACGUUCUUUUUCAAUAAUCUCCCAGUCACCUGUAGAGGUUCUGUAGUCUGUCUUCUCUAUGCACAACAAAAGU
Get precursor sequence
Structure
        10        20          30        40        50        60 
UCUUCACCUACAGACAAGCA--|       UCU            CA    U  CGUUCUUU 
                      GCAGACUG   AAUCUCUGCAGG  AUUG GA        U
                      UGUCUGAU   UUGGAGAUGUCC  UGAC CU        U
UGAAAACAACACGUAUCUCUUC^       GUC            AC    C  CUAAUAAC 
  120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Lch-Mir-216-P2a_5p (predicted)
mirBase accessionNone
Sequence 
0- UAAUCUCUGCAGGCAAUUGUGA -22
Get sequence
Star sequence

Lch-Mir-216-P2a_3p* (predicted)
mirBase accessionNone
Sequence 
41- CCCAGUCACCUGUAGAGGUUCUG -64
Get sequence