| MirGeneDB ID | Lch-Mir-217 |
|---|---|
| Family name | MIR-217 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-217-v1 Ami-Mir-217-v1 Bfl-Mir-217 Bla-Mir-217 Bta-Mir-217-v1 Cfa-Mir-217-v1 Cja-Mir-217-v1 Cli-Mir-217-v1 Cmi-Mir-217 Cpi-Mir-217-v1 Cpo-Mir-217-v1 Dno-Mir-217-v1 Dre-Mir-217-v1 Ebu-Mir-217-P1-v1 Ebu-Mir-217-P2-v1 Eca-Mir-217-v1 Ete-Mir-217-v1 Gga-Mir-217-v1 Gja-Mir-217-v1 Gmo-Mir-217 Hsa-Mir-217-v1 Laf-Mir-217 Loc-Mir-217 Mal-Mir-217 Mdo-Mir-217 Mml-Mir-217-v1 Mmr-Mir-217 Mmu-Mir-217-v1 Mun-Mir-217-v1 Neu-Mir-217-v1 Oan-Mir-217-v1 Ocu-Mir-217-v1 Pab-Mir-217-v1 Pbv-Mir-217-v1 Pma-Mir-217-P1 Pma-Mir-217-P2-v1 Rno-Mir-217-v1 Sha-Mir-217-v1 Spt-Mir-217 Sto-Mir-217-v1 Tgu-Mir-217-v1 Tni-Mir-217 Xla-Mir-217-P3-v1 Xla-Mir-217-P4-v1 Xtr-Mir-217-v1 |
| Node of Origin (locus) | Chordata |
| Node of Origin (family) | Chordata |
| Genome context (LatCha1_add) |
JH127673.1: 312721-312779 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-217) |
Mir-216-P2a
JH127673.1: 301830-301893 [+]
Ensembl
Mir-216-P2b JH127673.1: 312337-312398 [+] Ensembl Mir-217 JH127673.1: 312721-312779 [+] Ensembl |
| Seed | ACUGCAU |
| Precursor (pre-Mir +30nt flank) |
ACUGAAUAGCAGAGUUUGUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUACAACUUAACUACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAAUGAGAAUGet precursor sequence |
| Structure | 10 20 30 40 50 ACUGAAUAGCAGAGUUUGU--| CGC A C C U AUACAA GAUGU AG UA UGCAU AGGAACUGAU GG C CUACG UC GU ACGUA UCCUUGACUA CC U UAAGAGUAACUACGAACAAAU^ ACU C U A - AUCAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-217_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UACUGCAUCAGGAACUGAUUGGA -23
Get sequence
|
| Star sequence | Lch-Mir-217_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CAUCAGUUCCUAAUGCAUUGCC -59
Get sequence
|
