MirGeneDB 2.1
MirGeneDB ID

Ocu-Mir-217-v1

Family name MIR-217 (all species)
Seed ACUGCAU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-217
Paralogues Ocu-Mir-217-v2 
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Cfa-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Ete-Mir-217-v1  Gga-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmu-Mir-217-v1  Mun-Mir-217-v1  Oan-Mir-217-v1  Pbv-Mir-217-v1  Rno-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217  Xtr-Mir-217-v1 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(oryCun2_add)		 chr2: 130108839-130108897 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v1)		 Mir-216-P2a chr2: 130089612-130089673 [+] UCSC Ensembl
Mir-216-P2b chr2: 130101540-130101601 [+] UCSC Ensembl
Mir-217-v2 chr2: 130108838-130108898 [+] UCSC Ensembl
Mir-217-v1 chr2: 130108839-130108897 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUAAUUAUUACAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCUGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCACCAGUAAACCC
Get precursor sequence
Structure
        10          20        30        40        50         
CCUAAUUAUUACAGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                     CUACG   UC GU ACGUA UCCUUGACUA CC      U
CCCAAAUGACCACGAACAAAU^    ACU  C  U     A          -  ACUGUC 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
He Ki Te To Wh
Mature sequence

Ocu-Mir-217-v1_5p (predicted)
mirBase accessionMIMAT0048345
Sequence 
0- UACUGCAUCAGGAACUGAUUGGA -23
Get sequence
Star sequence

Ocu-Mir-217-v1_3p* (predicted)
mirBase accessionMIMAT0048346
Sequence 
37- CAUCAGUUCCUAAUGCAUUGCC -59
Get sequence