MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-217

Family name MIR-217 (all species)
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-217
Paralogues Ocu-Mir-217-v1 
Orthologues Bfl-Mir-217  Bla-Mir-217  Cmi-Mir-217  Gmo-Mir-217  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mmr-Mir-217  Spt-Mir-217  Tni-Mir-217 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(oryCun2_add)
chr2: 130108838-130108898 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v2)
Mir-216-P2a chr2: 130089612-130089673 [+] UCSC Ensembl
Mir-216-P2b chr2: 130101540-130101601 [+] UCSC Ensembl
Mir-217-v2 chr2: 130108838-130108898 [+] UCSC Ensembl
Mir-217-v1 chr2: 130108839-130108897 [+] UCSC Ensembl
Variant

Ocu-Mir-217-v2

Seed UACUGCA
Precursor
(pre-Mir +30nt flank)
ACCUAAUUAUUACAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCUGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCACCAGUAAACCCC
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Structure
        10        20          30        40        50        60
ACCUAAUUAUUACAGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                      GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                      CUACG   UC GU ACGUA UCCUUGACUA CC      U
CCCCAAAUGACCACGAACAAAU^    ACU  C  U     A          -  ACUGUC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Mature sequence

Ocu-Mir-217-v2_5p

mirBase accessionMIMAT0048345
Sequence
0- AUACUGCAUCAGGAACUGAUUGG -23
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Star sequence

Ocu-Mir-217-v2_3p*

mirBase accessionMIMAT0048346
Sequence
39- AUCAGUUCCUAAUGCAUUGCCU -61
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Variant

Ocu-Mir-217-v1

Seed ACUGCAU
Precursor
(pre-Mir +30nt flank)
CCUAAUUAUUACAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCUGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCACCAGUAAACCC
Get precursor sequence
Structure
        10          20        30        40        50         
CCUAAUUAUUACAGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                     CUACG   UC GU ACGUA UCCUUGACUA CC      U
CCCAAAUGACCACGAACAAAU^    ACU  C  U     A          -  ACUGUC 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Ki Te To Wh
Mature sequence

Ocu-Mir-217-v1_5p (predicted)

mirBase accessionMIMAT0048345
Sequence
0- UACUGCAUCAGGAACUGAUUGGA -23
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Star sequence

Ocu-Mir-217-v1_3p* (predicted)

mirBase accessionMIMAT0048346
Sequence
37- CAUCAGUUCCUAAUGCAUUGCC -59
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