| MirGeneDB ID | Gmo-Mir-217 |
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| Family name |
MIR-217 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-217
|
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| Paralogues |
|
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| Orthologues |
Aca-Mir-217-v1
Ami-Mir-217-v1
Bfl-Mir-217
Bla-Mir-217
Bta-Mir-217-v1
Cfa-Mir-217-v1
Cja-Mir-217-v1
Cli-Mir-217-v1
Cmi-Mir-217
Cpi-Mir-217-v1
Cpo-Mir-217-v1
Dno-Mir-217-v1
Dre-Mir-217-v1
Ebu-Mir-217-P1-v1
Ebu-Mir-217-P2-v1
Eca-Mir-217-v1
Ete-Mir-217-v1
Gga-Mir-217-v1
Gja-Mir-217-v1
Hsa-Mir-217-v1
Laf-Mir-217
Lch-Mir-217
Loc-Mir-217
Mal-Mir-217
Mdo-Mir-217
Mml-Mir-217-v1
Mmr-Mir-217
Mmu-Mir-217-v1
Mun-Mir-217-v1
Neu-Mir-217-v1
Oan-Mir-217-v1
Ocu-Mir-217-v1
Pab-Mir-217-v1
Pbv-Mir-217-v1
Pma-Mir-217-P1
Pma-Mir-217-P2-v1
Rno-Mir-217-v1
Sha-Mir-217-v1
Spt-Mir-217
Sto-Mir-217-v1
Tgu-Mir-217-v1
Tni-Mir-217
Xla-Mir-217-P3-v1
Xla-Mir-217-P4-v1
Xtr-Mir-217-v1
|
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| Node of Origin (locus) |
Chordata
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig368314: 111-169 [+]
UCSC
Ensembl
|
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| Seed |
ACUGCAU |
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Precursor
(pre-Mir +30nt flank) |
GCGUGAAGGCAGACAAUCUGGUGUGGAUGAUACUGCAUCAGGAACUGAUUGGCUGAUGCCUAGUGGCCAACAGUACCUGAUGCAUUUCCUUCAGCACCAAAAGAAGCAUCUCAAAAGUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCGUGAAGGCAGACAAUC-- -| U UAC A A UGAUG
UGGUG UGGA GA UGCAUCAGG ACUG UUGGC C
ACCAC ACUU CU ACGUAGUCC UGAC AACCG C
CUGAAAACUCUACGAAGAAA G^ C UU- A - GUGAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-217_5p |
| mirBase accession | MIMAT0044039 |
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| Sequence |
0- UACUGCAUCAGGAACUGAUUGGC -23
Get sequence
|
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| Star sequence |
Gmo-Mir-217_3p* |
| mirBase accession | MIMAT0044040 |
|---|
| Sequence |
37- CAACAGUACCUGAUGCAUUUCC -59
Get sequence
|
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