MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-217

Family name MIR-217 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-217
Paralogues
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Cfa-Mir-217-v1  Cja-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Eca-Mir-217-v1  Ete-Mir-217-v1  Gga-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmr-Mir-217  Mmu-Mir-217-v1  Mun-Mir-217-v1  Neu-Mir-217-v1  Oan-Mir-217-v1  Ocu-Mir-217-v1  Pab-Mir-217-v1  Pbv-Mir-217-v1  Rno-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217  Xtr-Mir-217-v1 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037338.1: 38628469-38628527 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v1)		 Mir-217-v2 NC_037338.1: 38628468-38628528 [-] UCSC Ensembl
Mir-217-v1 NC_037338.1: 38628469-38628527 [-] UCSC Ensembl
Mir-216-P2b NC_037338.1: 38640719-38640780 [-] UCSC Ensembl
Mir-216-P2a NC_037338.1: 38657092-38657153 [-] UCSC Ensembl
Variant

Bta-Mir-217-v1
Seed ACUGCAU
Precursor
(pre-Mir +30nt flank)		 
UAAUUAACACAGAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCGGUCACCAUCAGUUCCUCAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUAAACAU
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Structure
        10          20        30        40        50         
UAAUUAACACAGAGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                     CUACG   UC GU ACGUA UCCUUGACUA CC      U
UACAAAUGACUACGAACAAAU^    ACU  C  U     C          -  ACUGGC 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-217-v1_5p
mirBase accessionMIMAT0009267
Sequence 
0- UACUGCAUCAGGAACUGAUUGGA -23
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Proposed targets TargetScanVert: bta-miR-217
Star sequence

Bta-Mir-217-v1_3p*
mirBase accessionNone
Sequence 
37- CAUCAGUUCCUCAUGCAUUGCC -59
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Variant

Bta-Mir-217-v2
Seed UACUGCA
Precursor
(pre-Mir +30nt flank)		 
AUAAUUAACACAGAGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCGGUCACCAUCAGUUCCUCAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUAAACAUC
Get precursor sequence
Structure
        10        20          30        40        50        60
AUAAUUAACACAGAGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                      GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                      CUACG   UC GU ACGUA UCCUUGACUA CC      U
CUACAAAUGACUACGAACAAAU^    ACU  C  U     C          -  ACUGGC 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-217-v2_5p
mirBase accessionMIMAT0009267
Sequence 
0- AUACUGCAUCAGGAACUGAUUGG -23
Get sequence
Proposed targets TargetScanVert: bta-miR-217
Star sequence

Bta-Mir-217-v2_3p*
mirBase accessionNone
Sequence 
39- AUCAGUUCCUCAUGCAUUGCCU -61
Get sequence