MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-217

Family name MIR-217 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-217
Paralogues
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Cfa-Mir-217-v1  Cja-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Ete-Mir-217-v1  Gga-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmr-Mir-217  Mmu-Mir-217-v1  Mun-Mir-217-v1  Neu-Mir-217-v1  Oan-Mir-217-v1  Ocu-Mir-217-v1  Pab-Mir-217-v1  Pbv-Mir-217-v1  Rno-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217  Xtr-Mir-217-v1 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009162.1: 45366335-45366393 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v1)		 Mir-216-P2a CM009162.1: 45348559-45348620 [+] UCSC Ensembl
Mir-216-P2b CM009162.1: 45359145-45359204 [+] UCSC Ensembl
Mir-217-v2 CM009162.1: 45366334-45366394 [+] UCSC Ensembl
Mir-217-v1 CM009162.1: 45366335-45366393 [+] UCSC Ensembl
Variant

Eca-Mir-217-v1
Seed ACUGCAU
Precursor
(pre-Mir +30nt flank)		 
AAAUUAUUACAGUGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUUUUACU
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Structure
        10          20        30        40        50         
AAAUUAUUACAGUGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                     CUACG   UC GU ACGUA UCCUUGACUA CC      U
UCAUUUUGACUACGAACAAAU^    ACU  C  U     A          -  ACUGAC 
       110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-217-v1_5p
mirBase accessionMIMAT0013074
Sequence 
0- UACUGCAUCAGGAACUGAUUGGA -23
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Star sequence

Eca-Mir-217-v1_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAUCAGUUCCUAAUGCAUUGCC -59
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Variant

Eca-Mir-217-v2
Seed UACUGCA
Precursor
(pre-Mir +30nt flank)		 
UAAAUUAUUACAGUGUUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAGAAUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUUUUACUG
Get precursor sequence
Structure
        10        20          30        40        50        60
UAAAUUAUUACAGUGUUUUU--|    CGC  A  C     C          U  AUAAGA 
                      GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                      CUACG   UC GU ACGUA UCCUUGACUA CC      U
GUCAUUUUGACUACGAACAAAU^    ACU  C  U     A          -  ACUGAC 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-217-v2_5p
mirBase accessionMIMAT0013074
Sequence 
0- AUACUGCAUCAGGAACUGAUUGG -23
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Star sequence

Eca-Mir-217-v2_3p* (predicted)
mirBase accessionNone
Sequence 
39- AUCAGUUCCUAAUGCAUUGCCU -61
Get sequence