MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-217

Family name MIR-217 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-217
Paralogues
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Cfa-Mir-217-v1  Cja-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Eca-Mir-217-v1  Ete-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmr-Mir-217  Mmu-Mir-217-v1  Mun-Mir-217-v1  Neu-Mir-217-v1  Oan-Mir-217-v1  Ocu-Mir-217-v1  Pab-Mir-217-v1  Pbv-Mir-217-v1  Rno-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217  Xtr-Mir-217-v1 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(Gallus_gallus.GRCg6a)		 3: 342569-342627 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v1)		 Mir-217-v2 3: 342568-342628 [-] UCSC Ensembl
Mir-217-v1 3: 342569-342627 [-] UCSC Ensembl
Mir-216-P2b 3: 345249-345307 [-] UCSC Ensembl
Mir-216-P2a 3: 350639-350700 [-] UCSC Ensembl
Variant

Gga-Mir-217-v1
Seed ACUGCAU
Precursor
(pre-Mir +30nt flank)		 
AAGUCACUGCAGAGUUCUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAUAAUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUGAGUUU
Get precursor sequence
Structure
        10          20        30        40        50         
AAGUCACUGCAGAGUUCUU--|    CGC  A  C     C          U  AUAAUA 
                     GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                     CUACG   UC GU ACGUA UCCUUGACUA CC      U
UUUGAGUGACUACGAACAAAU^    ACU  C  U     A          -  ACUGAC 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-217-v1_5p
mirBase accessionMIMAT0001132
Sequence 
0- UACUGCAUCAGGAACUGAUUGGA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-217-5p
miRDB: MIMAT0001132
Star sequence

Gga-Mir-217-v1_3p*
mirBase accessionMIMAT0026513
Sequence 
37- CAUCAGUUCCUAAUGCAUUGCC -59
Get sequence
Proposed targets TargetScanVert: gga-miR-217-3p
miRDB: MIMAT0026513
Variant

Gga-Mir-217-v2
Seed UACUGCA
Precursor
(pre-Mir +30nt flank)		 
AAAGUCACUGCAGAGUUCUUGAUGUCGCAGAUACUGCAUCAGGAACUGAUUGGAUAAUAAUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAAGCAUCAGUGAGUUUC
Get precursor sequence
Structure
        10        20          30        40        50        60
AAAGUCACUGCAGAGUUCUU--|    CGC  A  C     C          U  AUAAUA 
                      GAUGU   AG UA UGCAU AGGAACUGAU GG      A
                      CUACG   UC GU ACGUA UCCUUGACUA CC      U
CUUUGAGUGACUACGAACAAAU^    ACU  C  U     A          -  ACUGAC 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-217-v2_5p
mirBase accessionMIMAT0001132
Sequence 
0- AUACUGCAUCAGGAACUGAUUGG -23
Get sequence
Proposed targets TargetScanVert: gga-miR-217-5p
miRDB: MIMAT0001132
Star sequence

Gga-Mir-217-v2_3p*
mirBase accessionMIMAT0026513
Sequence 
39- AUCAGUUCCUAAUGCAUUGCCU -61
Get sequence
Proposed targets TargetScanVert: gga-miR-217-3p
miRDB: MIMAT0026513