MirGeneDB 3.0
MirGeneDB ID

Ete-Mir-217

Family name MIR-217 (all species)
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Cfa-Mir-217-v1  Cja-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Eca-Mir-217-v1  Gga-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmr-Mir-217  Mmu-Mir-217-v1  Mun-Mir-217-v1  Neu-Mir-217-v1  Oan-Mir-217-v1  Ocu-Mir-217-v1  Pab-Mir-217-v1  Pbv-Mir-217-v1  Rno-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217  Xtr-Mir-217-v1 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(echTel2)		 JH980337: 15887003-15887061 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-217-v1)		 Mir-216-P2a JH980337: 15854854-15854915 [+] UCSC
Mir-216-P2b JH980337: 15879518-15879578 [+] UCSC
Mir-217-v2 JH980337: 15887002-15887062 [+] UCSC
Mir-217-v1 JH980337: 15887003-15887061 [+] UCSC
Variant

Ete-Mir-217-v1
Seed ACUGCAU
Precursor
(pre-Mir +30nt flank)		 
AACGUCACAAAGAGCUUUUGAUGUUGCAGGUACUGCAUCAGGAACUGAUCGGAUAAGUAUCUGUCACCAUCAGUUCCUAAUGCACUGCCUUCAGCAUCUAACUGAGCUUCAGGAAACAC
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Structure
        10          20        30        40        50         
AACGUCACAAAGAGCUUUU--|      C     C     C          C  AUAAGU 
                     GAUGUUG AGGUA UGCAU AGGAACUGAU GG      A
                     CUACGAC UCCGU ACGUA UCCUUGACUA CC      U
CACAAAGGACUUCGAGUCAAU^      U     C     A          -  ACUGUC 
       110       100        90        80        70         60
Deep sequencing
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CommentThere is a one nt mismatch between the reads and the genomic sequence the 3' end of the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ete-Mir-217-v1_5p
mirBase accessionNone
Sequence 
0- UACUGCAUCAGGAACUGAUCGGA -23
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Star sequence

Ete-Mir-217-v1_3p*
mirBase accessionNone
Sequence 
37- CAUCAGUUCCUAAUGCACUGCC -59
Get sequence
Variant

Ete-Mir-217-v2
Seed UACUGCA
Precursor
(pre-Mir +30nt flank)		 
UAACGUCACAAAGAGCUUUUGAUGUUGCAGGUACUGCAUCAGGAACUGAUCGGAUAAGUAUCUGUCACCAUCAGUUCCUAAUGCACUGCCUUCAGCAUCUAACUGAGCUUCAGGAAACACC
Get precursor sequence
Structure
        10        20          30        40        50        60
UAACGUCACAAAGAGCUUUU--|      C     C     C          C  AUAAGU 
                      GAUGUUG AGGUA UGCAU AGGAACUGAU GG      A
                      CUACGAC UCCGU ACGUA UCCUUGACUA CC      U
CCACAAAGGACUUCGAGUCAAU^      U     C     A          -  ACUGUC 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a one nt mismatch between the reads and the genomic sequence the 3' end of the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ete-Mir-217-v2_5p
mirBase accessionNone
Sequence 
0- GUACUGCAUCAGGAACUGAUCGG -23
Get sequence
Star sequence

Ete-Mir-217-v2_3p*
mirBase accessionNone
Sequence 
39- AUCAGUUCCUAAUGCACUGCCU -61
Get sequence