MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-217

Family name MIR-217 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-217
Paralogues
Orthologues Aca-Mir-217-v1  Ami-Mir-217-v1  Bfl-Mir-217  Bla-Mir-217  Bta-Mir-217-v1  Cfa-Mir-217-v1  Cja-Mir-217-v1  Cli-Mir-217-v1  Cmi-Mir-217  Cpi-Mir-217-v1  Cpo-Mir-217-v1  Dno-Mir-217-v1  Dre-Mir-217-v1  Eca-Mir-217-v1  Ete-Mir-217-v1  Gga-Mir-217-v1  Gja-Mir-217-v1  Gmo-Mir-217  Hsa-Mir-217-v1  Laf-Mir-217  Lch-Mir-217  Loc-Mir-217  Mal-Mir-217  Mdo-Mir-217  Mml-Mir-217-v1  Mmr-Mir-217  Mmu-Mir-217-v1  Mun-Mir-217-v1  Neu-Mir-217-v1  Oan-Mir-217-v1  Ocu-Mir-217-v1  Pab-Mir-217-v1  Pbv-Mir-217-v1  Sha-Mir-217-v1  Spt-Mir-217  Sto-Mir-217-v1  Tgu-Mir-217-v1  Tni-Mir-217  Xtr-Mir-217-v1 
Node of Origin (locus) Chordata
Node of Origin (family) Chordata
Genome context
(rn6)		 chr14: 113119560-113119618 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-217-v1)		 Mir-216-P2a chr14: 113101097-113101158 [+] UCSC Ensembl
Mir-216-P2b chr14: 113112147-113112208 [+] UCSC Ensembl
Mir-217-v2 chr14: 113119559-113119619 [+] UCSC Ensembl
Mir-217-v1 chr14: 113119560-113119618 [+] UCSC Ensembl
Variant

Rno-Mir-217-v1
Seed ACUGCAU
Precursor
(pre-Mir +30nt flank)		 
CCACAGUCAUUGUAGUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGACUGGAUAAGACUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAGCCACCAGCAAACAU
Get precursor sequence
Structure
        10          20        30        40        50         
CCACAGUCAUUGUAGUUUU--|    CGC  A  C     C         C   AUAAGA 
                     GAUGU   AG UA UGCAU AGGAACUGA UGG      C
                     CUACG   UC GU ACGUA UCCUUGACU ACC      U
UACAAACGACCACCGACAAAU^    ACU  C  U     A         -   ACUGAC 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-217-v1_5p
mirBase accessionMIMAT0000887
Sequence 
0- UACUGCAUCAGGAACUGACUGGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000887
TargetScanVert: rno-miR-217-5p
miRDB: MIMAT0000887
Star sequence

Rno-Mir-217-v1_3p*
mirBase accessionMIMAT0017161
Sequence 
37- CAUCAGUUCCUAAUGCAUUGCC -59
Get sequence
Proposed targets TargetScanVert: rno-miR-217-3p
miRDB: MIMAT0017161
Variant

Rno-Mir-217-v2
Seed UACUGCA
Precursor
(pre-Mir +30nt flank)		 
ACCACAGUCAUUGUAGUUUUGAUGUCGCAGAUACUGCAUCAGGAACUGACUGGAUAAGACUCAGUCACCAUCAGUUCCUAAUGCAUUGCCUUCAGCAUCUAAACAGCCACCAGCAAACAUC
Get precursor sequence
Structure
        10        20          30        40        50        60
ACCACAGUCAUUGUAGUUUU--|    CGC  A  C     C         C   AUAAGA 
                      GAUGU   AG UA UGCAU AGGAACUGA UGG      C
                      CUACG   UC GU ACGUA UCCUUGACU ACC      U
CUACAAACGACCACCGACAAAU^    ACU  C  U     A         -   ACUGAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-217-v2_5p
mirBase accessionMIMAT0000887
Sequence 
0- AUACUGCAUCAGGAACUGACUGG -23
Get sequence
Proposed targets microrna.org: MIMAT0000887
TargetScanVert: rno-miR-217-5p
miRDB: MIMAT0000887
Star sequence

Rno-Mir-217-v2_3p*
mirBase accessionMIMAT0017161
Sequence 
39- AUCAGUUCCUAAUGCAUUGCCU -61
Get sequence
Proposed targets TargetScanVert: rno-miR-217-3p
miRDB: MIMAT0017161