Mir-216-P2a

MirGeneDB ID

Bta-Mir-216-P2a

Family name

MIR-216 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-216b

Paralogues

Bta-Mir-216-P2b

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aga-Mir-216-P2 Ami-Mir-216-P2a Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cja-Mir-216-P2a Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Eca-Mir-216-P2a Ete-Mir-216-P2a Gga-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Hsa-Mir-216-P2a Isc-Mir-216-P2 Laf-Mir-216-P2a Lch-Mir-216-P2a Loc-Mir-216-P2a Mal-Mir-216-P2a Mdo-Mir-216-P2a Mml-Mir-216-P2a Mmr-Mir-216-P2a Mmu-Mir-216-P2a Neu-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pab-Mir-216-P2a Pbv-Mir-216-P2a Pca-Mir-216-P2 Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Sto-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a Tur-Mir-216-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037338.1: 38657092-38657153 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2a)

Mir-217-v2 NC_037338.1: 38628468-38628528 [-] UCSC Ensembl
Mir-217-v1 NC_037338.1: 38628469-38628527 [-] UCSC Ensembl
Mir-216-P2b NC_037338.1: 38640719-38640780 [-] UCSC Ensembl
Mir-216-P2a NC_037338.1: 38657092-38657153 [-] UCSC Ensembl

Seed

AAUCUCU

Precursor
(pre-Mir +30nt flank)

UUAAAUACAACUUCAAAGUGGCAGACUGGAAAAUCUCUGCAGGCAAAUGUGAUGUCACUAAAGAAAUCACACACUUACCCGUAGAGAUUCUACAGUCUGACAUCUUCAAACAUCAAACCAUU

Get precursor sequence

Structure

        10          20        30        40        50        60
UUAAAUACAACUUCAAA--|  G       GAA         A  C  A    AUGUCACU 
                   GUG CAGACUG   AAUCUCUGC GG AA UGUG        A
                   UAC GUCUGAC   UUAGAGAUG CC UU ACAC        A
UUACCAAACUACAAACUUC^  A       AUC         C  A  C    ACUAAAGA 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-216-P2a_5p

mirBase accession

MIMAT0009266

Sequence

0- AAAUCUCUGCAGGCAAAUGUGA -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-216b

Star sequence

Bta-Mir-216-P2a_3p*

mirBase accession

None

Sequence

40- ACACUUACCCGUAGAGAUUCUA -62

Get sequence