Mir-216-P2a

MirGeneDB ID

Loc-Mir-216-P2a

Family name

MIR-216 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-216-P2b

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aga-Mir-216-P2 Ami-Mir-216-P2a Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cja-Mir-216-P2a Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Eca-Mir-216-P2a Ete-Mir-216-P2a Gga-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Hsa-Mir-216-P2a Isc-Mir-216-P2 Laf-Mir-216-P2a Lch-Mir-216-P2a Mal-Mir-216-P2a Mdo-Mir-216-P2a Mml-Mir-216-P2a Mmr-Mir-216-P2a Mmu-Mir-216-P2a Neu-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pab-Mir-216-P2a Pbv-Mir-216-P2a Pca-Mir-216-P2 Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Sto-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a Tur-Mir-216-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(LepOcu1)

LG16: 3940971-3941030 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2a)

Mir-216-P2a LG16: 3940971-3941030 [+] Ensembl
Mir-216-P2b LG16: 3942115-3942176 [+] Ensembl
Mir-217 LG16: 3942544-3942602 [+] Ensembl

Seed

AAUCUCU

Precursor
(pre-Mir +30nt flank)

GCCGCCCUGCCGGCCUGGGGCCUGACUGUGUAAUCUCUGCAGGCAACUGUGACGUGUUUCCGUGUCUCACAAUCACCUGGAGAGAUUCGGCAGUCCGUCCGCUCCGUGCCGGGACUGGGA

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Structure

        10           20        30        40        50         
GCCGCCCUGCCGGCCUG---|   CU      GU       G    CAAC     CGUGUU 
                    GGGC  GACUGU  AAUCUCU CAGG    UGUGA      U
                    CCUG  CUGACG  UUAGAGA GUCC    ACACU      C
AGGGUCAGGGCCGUGCCUCG^   C-      GC       G    ACUA     CUGUGC 
.       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-216-P2a_5p

mirBase accession

None

Sequence

0- UAAUCUCUGCAGGCAACUGUGA -22

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Star sequence

Loc-Mir-216-P2a_3p*

mirBase accession

None

Sequence

38- ACAAUCACCUGGAGAGAUUCGG -60

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