Mir-216-P2

MirGeneDB ID

Dma-Mir-216-P2

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Dma-Mir-216-P1

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aca-Mir-216-P2b Ami-Mir-216-P2a Ami-Mir-216-P2b Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cfa-Mir-216-P2b Cgi-Mir-216-P2 Cli-Mir-216-P2a Cli-Mir-216-P2b Cmi-Mir-216-P2a Cmi-Mir-216-P2b Cpi-Mir-216-P2a Cpi-Mir-216-P2b Cpo-Mir-216-P2a Cpo-Mir-216-P2b Cte-Mir-216-P2c Cte-Mir-216-P2d Dan-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2a Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Ebu-Mir-216-P2b1 Efe-Mir-216-P2 Esc-Mir-216-P2k Ete-Mir-216-P2a Ete-Mir-216-P2b Gga-Mir-216-P2a Gga-Mir-216-P2b Gja-Mir-216-P2a Gja-Mir-216-P2b Gmo-Mir-216-P2a Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2a Hsa-Mir-216-P2b Isc-Mir-216-P2 Lan-Mir-216-P2e Lan-Mir-216-P2f Lch-Mir-216-P2a Lch-Mir-216-P2b Lgi-Mir-216-P2 Loc-Mir-216-P2a Loc-Mir-216-P2b Lpo-Mir-216-P2g Lpo-Mir-216-P2h Lpo-Mir-216-P2i Mal-Mir-216-P2a Mal-Mir-216-P2b Mdo-Mir-216-P2a Mdo-Mir-216-P2b Mml-Mir-216-P2a Mml-Mir-216-P2b Mmu-Mir-216-P2a Mmu-Mir-216-P2b Mun-Mir-216-P2b Npo-Mir-216-P2j Npo-Mir-216-P2k Oan-Mir-216-P2a Oan-Mir-216-P2b Obi-Mir-216-P2j Obi-Mir-216-P2k Ocu-Mir-216-P2a Ocu-Mir-216-P2b Ovu-Mir-216-P2j Ovu-Mir-216-P2k Pbv-Mir-216-P2a Pbv-Mir-216-P2b Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Pma-Mir-216-P2b1 Rno-Mir-216-P2a Rno-Mir-216-P2b Sha-Mir-216-P2a Sha-Mir-216-P2b Sme-Mir-216-P2l Sme-Mir-216-P2m Spt-Mir-216-P2a Spt-Mir-216-P2b Sto-Mir-216-P2a Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2a Tgu-Mir-216-P2b Tni-Mir-216-P2a Tni-Mir-216-P2b Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(DMA_ASM399081)

NC_046176.1: 6126328-6126441 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CUAUUACUUUGAGCGAUGGCUUUCGCCUGGAAAUCUCAUACGGUAAUUUGGAGAAGAAUGGGGAAAUUUCUUGAUGGAAAUGGUUUUUCGCGCACCUGCGUGAUUUUCCAAAACCCAGUACCCGAAUUGCCGUCUGGGGUGGCCAGGCGAUCACCCCAGUAGCUACUAACCUCU

Get precursor sequence

Structure

        10          20        30        40        50        60        70        80      
CUAUUACUUUGAGCGAU--| CUU        AA      U            AGAAGAAUGGGGAAAUUUCUUGAUGGAAAUGGUU 
                   GG   UCGCCUGG  AUCUCA ACGGUAAUUUGG                                  U
                   CC   AGCGGACC  UGGGGU UGCCGUUAAGCC                                  U
UCUCCAAUCAUCGAUGACC^ ACU        GG      C            CAUGACCCAAAACCUUUUAGUGCGUCCACGCGCU 
  170       160       150       140       130       120       110       100        90

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UG at 5p(-14)

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Mature sequence

Dma-Mir-216-P2_5p

mirBase accession

None

Sequence

0- AAAUCUCAUACGGUAAUUUGGA -22

Get sequence

Star sequence

Dma-Mir-216-P2_3p*

mirBase accession

None

Sequence

93- GAAUUGCCGUCUGGGGUGGCC -114

Get sequence