Mir-216-P2b3

MirGeneDB ID

Xla-Mir-216-P2b3

Family name

MIR-216 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-216

Paralogues

Xla-Mir-216-P2b4

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xtr-Mir-216-P2b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Nephrozoa

Genome context
(GCF_001663975.1_XLA_v2)

NC_030732.1: 33744736-33744797 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b3)

Mir-216-P2b3 NC_030732.1: 33744736-33744797 [+] UCSC Ensembl
Mir-217-P3-v2 NC_030732.1: 33745095-33745155 [+] UCSC Ensembl
Mir-217-P3-v1 NC_030732.1: 33745096-33745154 [+] UCSC Ensembl

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

ACGGCUAAGCUAAAUGGCUGUGAAUUGGCUUAAUCUCAGCUGGCAACUGUGAGCGGUUAAUAAAUUAUCUCACAGUGGUCUCUGGGAUUAUGCUAAACACAGCAAUUCUUUUGCUUUAUGGA

Get precursor sequence

Structure

        10           20        30        40        50        60 
ACGGCUAAGCUAAAUGG---|    AA     U         CU   A        CGGUUAA 
                    CUGUG  UUGGC UAAUCUCAG  GGC ACUGUGAG       \
                    GACAC  AAUCG AUUAGGGUC  CUG UGACACUC       U
AGGUAUUUCGUUUUCUUAAC^    A-     U         U-   G        UAUUAAA 
120       110       100         90         80        70