MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-216-P2b

Family name MIR-216 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-216-P2a 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2b  Aga-Mir-216-P2  Ami-Mir-216-P2b  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2b  Cja-Mir-216-P2b  Cli-Mir-216-P2b  Cmi-Mir-216-P2b  Cpi-Mir-216-P2b  Cpo-Mir-216-P2b  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2b1  Eca-Mir-216-P2b  Ete-Mir-216-P2b  Gga-Mir-216-P2b  Gja-Mir-216-P2b  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Laf-Mir-216-P2b  Lch-Mir-216-P2b  Loc-Mir-216-P2b  Mal-Mir-216-P2b  Mdo-Mir-216-P2b  Mml-Mir-216-P2b  Mmr-Mir-216-P2b  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Neu-Mir-216-P2b  Oan-Mir-216-P2b  Ocu-Mir-216-P2b  Pab-Mir-216-P2b  Pbv-Mir-216-P2b  Pca-Mir-216-P2  Pma-Mir-216-P2b1  Rno-Mir-216-P2b  Sha-Mir-216-P2b  Spt-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2b  Tni-Mir-216-P2b  Tur-Mir-216-P2  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4  Xtr-Mir-216-P2b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(GCA_003427355_STO_add)		 BFAA01001329.1: 110746-110807 [+]
Clustered miRNAs
(< 50kb from Mir-216-P2b)		 Mir-216-P2a BFAA01001329.1: 91747-91807 [+]
Mir-216-P2b BFAA01001329.1: 110746-110807 [+]
Mir-217-v2 BFAA01001329.1: 111508-111568 [+]
Mir-217-v1 BFAA01001329.1: 111509-111567 [+]
Seed AAUCUCA
Precursor
(pre-Mir +30nt flank)		 
AAGGCUAACAAGAACUGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGUGUUUAAUAGUUUCCCCCACAGUGGUCACUGGGAUUAUGCUAAAUACAGUAAUUUCUUUGUACUGUAUC
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Structure
        10           20        30        40        50        60 
AAGGCUAACAAGAACUG---|    AG     U         C    A      AGUGUUUAA 
                    CUGUG  UUGGC UAAUCUCAG UGGC ACUGUG         \
                    GACAU  AAUCG AUUAGGGUC ACUG UGACAC         U
CUAUGUCAUGUUUCUUUAAU^    A-     U         -    G      CCCCUUUGA 
120       110       100         90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
- +
To
Mature sequence

Sto-Mir-216-P2b_5p
mirBase accessionNone
Sequence 
0- UAAUCUCAGCUGGCAACUGUGAG -23
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Star sequence

Sto-Mir-216-P2b_3p* (predicted)
mirBase accessionNone
Sequence 
40- CACAGUGGUCACUGGGAUUAUG -62
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