Mir-216-P2b

MirGeneDB ID

Tgu-Mir-216-P2b

Family name

MIR-216 (all species)

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-216a

Paralogues

Tgu-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(TaeGut1_add)

3: 86150167-86150227 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-217-v2 3: 86148043-86148103 [-] UCSC Ensembl
Mir-217-v1 3: 86148044-86148102 [-] UCSC Ensembl
Mir-216-P2b 3: 86150167-86150227 [-] UCSC Ensembl
Mir-216-P2a 3: 86155263-86155324 [-] UCSC Ensembl

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

AGGCCUAACCUGGAUGGCUGUGAGUUGGCUUAAUCUCAGCUGGCAACUGUGAGCAGUUAAUAACUCUCUCACAGUUGUAGCUGGGAUUAUGCUAAACACAGCAAUUUCUUUGCUCCAAUGG

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Structure

        10           20        30        40        50        60
AGGCCUAACCUGGAUGG---|    AG     U            G          CAGUUA 
                    CUGUG  UUGGC UAAUCUCAGCUG CAACUGUGAG      A
                    GACAC  AAUCG AUUAGGGUCGAU GUUGACACUC      U
GGUAACCUCGUUUCUUUAAC^    A-     U            -          UCUCAA 
 .       110       100         90        80         70

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma	Ma

Mature sequence

Tgu-Mir-216-P2b_5p

mirBase accession

MIMAT0014576

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

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Star sequence

Tgu-Mir-216-P2b_3p*

mirBase accession

MIMAT0027008

Sequence

39- CACAGUUGUAGCUGGGAUUAUG -61

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