MirGeneDB ID | Mmu-Mir-216-P2b |
Family name |
MIR-216 (all species) |
Species |
House mouse (Mus musculus) |
MiRBase ID |
mmu-mir-216a
|
Paralogues |
Mmu-Mir-216-P2a
|
Orthologues |
Aae-Mir-216-P2
Aca-Mir-216-P2b
Aga-Mir-216-P2
Ami-Mir-216-P2b
Asu-Mir-216-P2
Ava-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bko-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Bta-Mir-216-P2b
Cbr-Mir-216-P2
Cel-Mir-216-P2
Cfa-Mir-216-P2b
Cja-Mir-216-P2b
Cli-Mir-216-P2b
Cmi-Mir-216-P2b
Cpi-Mir-216-P2b
Cpo-Mir-216-P2b
Csc-Mir-216-P2
Dan-Mir-216-P2
Dlo-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dno-Mir-216-P2b
Dpu-Mir-216-P2
Dre-Mir-216-P2b
Dsi-Mir-216-P2
Dya-Mir-216-P2
Ebu-Mir-216-P2b1
Eca-Mir-216-P2b
Ete-Mir-216-P2b
Gga-Mir-216-P2b
Gja-Mir-216-P2b
Gmo-Mir-216-P2b
Hme-Mir-216-P2
Hsa-Mir-216-P2b
Isc-Mir-216-P2
Laf-Mir-216-P2b
Lch-Mir-216-P2b
Loc-Mir-216-P2b
Mal-Mir-216-P2b
Mdo-Mir-216-P2b
Mml-Mir-216-P2b
Mmr-Mir-216-P2b
Mun-Mir-216-P2b
Neu-Mir-216-P2b
Oan-Mir-216-P2b
Ocu-Mir-216-P2b
Pab-Mir-216-P2b
Pbv-Mir-216-P2b
Pca-Mir-216-P2
Pma-Mir-216-P2b1
Rno-Mir-216-P2b
Sha-Mir-216-P2b
Spt-Mir-216-P2b
Sto-Mir-216-P2b
Tca-Mir-216-P2
Tgu-Mir-216-P2b
Tni-Mir-216-P2b
Tur-Mir-216-P2
Xla-Mir-216-P2b3
Xla-Mir-216-P2b4
Xtr-Mir-216-P2b
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Nephrozoa
|
Genome context (mm10) |
chr11: 28757018-28757079 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-216-P2b) |
Mir-216-P2a
chr11: 28746204-28746265 [+]
UCSC
Ensembl
Mir-216-P2b
chr11: 28757018-28757079 [+]
UCSC
Ensembl
Mir-217-v2
chr11: 28763760-28763820 [+]
UCSC
Ensembl
Mir-217-v1
chr11: 28763761-28763819 [+]
UCSC
Ensembl
|
Seed |
AAUCUCA |
Precursor (pre-Mir +30nt flank) |
AGGUCCAACCUGGAUGGCUAUGAGUUGGUUUAAUCUCAGCUGGCAACUGUGAGAUGUCCCUAUCAUUCCUCACAGUGGUCUCUGGGAUUAUGCUAAACAGAGCAAUUUCCUUGACCUUGUGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGGUCCAACCUGGAUGG---| A AG U CU A AUGUCCC
CU UG UUGGU UAAUCUCAG GGC ACUGUGAG \
GA AC AAUCG AUUAGGGUC CUG UGACACUC U
GGUGUUCCAGUUCCUUUAAC^ G A- U U- G CUUACUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Br |
Br |
Ce |
Ce |
Em |
Em |
He |
Ki |
Li |
Lu |
Ov |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Mmu-Mir-216-P2b_5p |
mirBase accession | MIMAT0000662 |
Sequence |
0- UAAUCUCAGCUGGCAACUGUGAG -23
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000662
TargetScanVert: mmu-miR-216a-5p
miRDB: MIMAT0000662
|
Star sequence |
Mmu-Mir-216-P2b_3p* |
mirBase accession | MIMAT0017054 |
Sequence |
40- CACAGUGGUCUCUGGGAUUAUG -62
Get sequence
|
Proposed targets |
TargetScanVert: mmu-miR-216a-3p
miRDB: MIMAT0017054
|