Mir-216-P2b

MirGeneDB ID

Dre-Mir-216-P2b

Family name

MIR-216 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-216a

Paralogues

Dre-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(danRer11)

chr22: 28779961-28780023 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-217-v1 chr22: 28779730-28779788 [-] UCSC Ensembl
Mir-217-v2 chr22: 28779730-28779789 [-] UCSC Ensembl
Mir-216-P2b chr22: 28779961-28780023 [-] UCSC Ensembl
Mir-216-P2a chr22: 28780265-28780323 [-] UCSC Ensembl

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

AACCUGCUAUUGAGCAGCUGAUUUUUGGCAUAAUCUCAGCUGGCAACUGUGAGUAGUGUUUUCAUCCCUCUCACAGGCGCUGCUGGGGUUCUGUCACACACAGCACCUGCAAAACAAGACAAA

Get precursor sequence

Structure

        10           20        30        40        50        60 
AACCUGCUAUUGAGCAG---|  AUUUU     U         U   AA       UAGUGUU 
                    CUG     UGGCA AAUCUCAGC GGC  CUGUGAG       U
                    GAC     ACUGU UUGGGGUCG UCG  GACACUC       U
AAACAGAACAAAACGUCCAC^  ACAC-     C         -   CG       UCCCUAC 
 120       110       100         90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-216-P2b_5p

mirBase accession

MIMAT0001284

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-216a

Star sequence

Dre-Mir-216-P2b_3p*

mirBase accession

None

Sequence

41- CACAGGCGCUGCUGGGGUUCUG -63

Get sequence