Mir-216-P2b

MirGeneDB ID

Gmo-Mir-216-P2b

Family name

MIR-216 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-216a

Paralogues

Gmo-Mir-216-P2a

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2b Aga-Mir-216-P2 Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2b Cja-Mir-216-P2b Cli-Mir-216-P2b Cmi-Mir-216-P2b Cpi-Mir-216-P2b Cpo-Mir-216-P2b Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2b Ete-Mir-216-P2b Gga-Mir-216-P2b Gja-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2b Lch-Mir-216-P2b Loc-Mir-216-P2b Mal-Mir-216-P2b Mdo-Mir-216-P2b Mml-Mir-216-P2b Mmr-Mir-216-P2b Mmu-Mir-216-P2b Mun-Mir-216-P2b Neu-Mir-216-P2b Oan-Mir-216-P2b Ocu-Mir-216-P2b Pab-Mir-216-P2b Pbv-Mir-216-P2b Pca-Mir-216-P2 Pma-Mir-216-P2b1 Rno-Mir-216-P2b Sha-Mir-216-P2b Spt-Mir-216-P2b Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2b Tni-Mir-216-P2b Tur-Mir-216-P2 Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

scaffold03540: 56-118 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2b)

Mir-216-P2b scaffold03540: 56-118 [-] UCSC Ensembl
Mir-216-P2a scaffold03540: 796-858 [-] UCSC Ensembl

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

CUUCUUCGCAAGUUCUGCUGCGCGUUGGUAAAAUCUCAGCUGGCAACUGUGAGUCUUUCACUAUCUGCACUCACAAUGGCCGCUGGGAUUAUGCUAAACGUAGCGCGGCGGCGGCUACGCUGG

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Structure

        10           20        30        40        50        60 
CUUCUUCGCAAGUUCUG---|    CG      A         U   AAC      UCUUUCA 
                    CUGCG  UUGGUA AAUCUCAGC GGC   UGUGAG       C
                    GAUGC  AAUCGU UUAGGGUCG CCG   ACACUC       U
GGUCGCAUCGGCGGCGGCGC^    A-      A         -   GUA      ACGUCUA 
 120       110       100         90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-216-P2b_5p

mirBase accession

MIMAT0044329

Sequence

0- AAAUCUCAGCUGGCAACUGUGAG -23

Get sequence

Star sequence

Gmo-Mir-216-P2b_3p*

mirBase accession

MIMAT0044330

Sequence

41- CACAAUGGCCGCUGGGAUUAUG -63

Get sequence