MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-216-P2b

Family name MIR-216 (all species)
Seed AAUCUCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-216a
Paralogues Gmo-Mir-216-P2a 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2b  Ami-Mir-216-P2b  Asu-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2b  Cgi-Mir-216-P2  Cli-Mir-216-P2b  Cmi-Mir-216-P2b  Cpi-Mir-216-P2b  Cpo-Mir-216-P2b  Dan-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2b1  Efe-Mir-216-P2  Ete-Mir-216-P2b  Gga-Mir-216-P2b  Gja-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Lch-Mir-216-P2b  Lgi-Mir-216-P2  Loc-Mir-216-P2b  Mal-Mir-216-P2b  Mdo-Mir-216-P2b  Mml-Mir-216-P2b  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Oan-Mir-216-P2b  Ocu-Mir-216-P2b  Pbv-Mir-216-P2b  Pma-Mir-216-P2b1  Rno-Mir-216-P2b  Sha-Mir-216-P2b  Spt-Mir-216-P2b  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2b  Tni-Mir-216-P2b  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4  Xtr-Mir-216-P2b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 scaffold03540: 56-118 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2b)		 Mir-216-P2b scaffold03540: 56-118 [-] UCSC Ensembl
Mir-216-P2a scaffold03540: 796-858 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCUUCGCAAGUUCUGCUGCGCGUUGGUAAAAUCUCAGCUGGCAACUGUGAGUCUUUCACUAUCUGCACUCACAAUGGCCGCUGGGAUUAUGCUAAACGUAGCGCGGCGGCGGCUACGCUGG
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Structure
        10           20        30        40        50        60 
CUUCUUCGCAAGUUCUG---|    CG      A         U   AAC      UCUUUCA 
                    CUGCG  UUGGUA AAUCUCAGC GGC   UGUGAG       C
                    GAUGC  AAUCGU UUAGGGUCG CCG   ACACUC       U
GGUCGCAUCGGCGGCGGCGC^    A-      A         -   GUA      ACGUCUA 
 120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-216-P2b_5p
mirBase accessionMIMAT0044329
Sequence 
0- AAAUCUCAGCUGGCAACUGUGAG -23
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Star sequence

Gmo-Mir-216-P2b_3p*
mirBase accessionMIMAT0044330
Sequence 
41- CACAAUGGCCGCUGGGAUUAUG -63
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