Mir-216-P2f

MirGeneDB ID

Sme-Mir-216-P2f

Family name

MIR-216 (all species)

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-747

Paralogues

Sme-Mir-216-P2e

Orthologues

Aae-Mir-216-P2 Aga-Mir-216-P2 Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Cbr-Mir-216-P2 Cel-Mir-216-P2 Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dpu-Mir-216-P2 Dsi-Mir-216-P2 Dya-Mir-216-P2 Hme-Mir-216-P2 Isc-Mir-216-P2 Pca-Mir-216-P2 Tca-Mir-216-P2 Tur-Mir-216-P2

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Nephrozoa

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000007_dd_Smes_g4_7: 5198956-5199024 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2f)

Mir-216-P2f NNSW01000007_dd_Smes_g4_7: 5198956-5199024 [+] UCSC Ensembl
Mir-12-P11 NNSW01000007_dd_Smes_g4_7: 5199085-5199146 [+] UCSC Ensembl

Seed

AAUCUCA

Precursor
(pre-Mir +30nt flank)

UUUUAGACUCCAAUGUCUCAGUUCUGUUCAUAAUCUCAUCUGGUAAUUGAAGUGAUCUAUUUUUUAAAAAAAGAAACUUCAUUAUCAUUUCAGAUUGUAAUCGAAAUGAUUAGCUGUCUGUGAAUUAUG

Get precursor sequence

Structure

        10           20        30        40        50        60    
UUUUAGACUCCAAUGUC---|  G   U   C       CAUC       U     GAUCUAUUUU 
                    UCA UUC GUU AUAAUCU    UGGUAAU GAAGU          U
                    AGU AAG UAA UGUUAGA    ACUAUUA CUUCA          U
GUAUUAAGUGUCUGUCGAUU^  A   C   -       CUUU       -     AAGAAAAAAA 
       120       110       100         90         80        70