Mir-12-P11

MirGeneDB ID

Sme-Mir-12-P11

Family name

MIR-12 (all species)

Seed

GAGUAUU

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-2158

Paralogues

Sme-Mir-12-P9 Sme-Mir-12-P10

Orthologues

Aae-Mir-12 Bge-Mir-12 Bpl-Mir-12 Cgi-Mir-12 Csc-Mir-12 Cte-Mir-12 Dan-Mir-12 Dma-Mir-12 Dme-Mir-12 Dmo-Mir-12 Dpu-Mir-12 Dsi-Mir-12 Esc-Mir-12 Hme-Mir-12 Isc-Mir-12 Lgi-Mir-12 Npo-Mir-12 Ovu-Mir-12 Tca-Mir-12

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Protostomia

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000007_dd_Smes_g4_7: 5199085-5199146 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-12-P11)

Mir-216-P2m NNSW01000007_dd_Smes_g4_7: 5198956-5199024 [+] UCSC Ensembl
Mir-12-P11 NNSW01000007_dd_Smes_g4_7: 5199085-5199146 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUUUUUUUGGGAAAGUAAUUUUAAUAUUUUGAGUAUUUUUUCGUAUACCGAACAGAUCAUCGUUGACUUUCGGUAACGAAGAAUACUUGGAAUUGAGAAAUUUAUUCGUCGAUGAACAUGA

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGUUUUUUUGGGAAAGU--|     AAU    UG         U   A       CAGAUCA 
                   AAUUUU   AUUU  AGUAUUUUU CGU UACCGAA       U
                   UUAAAG   UAAG  UCAUAAGAA GCA AUGGCUU       C
AGUACAAGUAGCUGCUUAU^     AGU    GU         -   -       UCAGUUG 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Mature sequence

Sme-Mir-12-P11_5p

mirBase accession

MIMAT0011251

Sequence

0- UGAGUAUUUUUUCGUAUACCGAA -23

Get sequence

Star sequence

Sme-Mir-12-P11_3p*

mirBase accession

MIMAT0012149

Sequence

41- CGGUAACGAAGAAUACUUGGA -62

Get sequence