MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-12-P11

Family name MIR-12 (all species)
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2158
Paralogues Sme-Mir-12-P9  Sme-Mir-12-P10 
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Snu-Mir-12  Tca-Mir-12  War-Mir-12 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000007_dd_Smes_g4_7: 5199085-5199146 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12-P11)		 Mir-216-P2f NNSW01000007_dd_Smes_g4_7: 5198956-5199024 [+] UCSC Ensembl
Mir-12-P11 NNSW01000007_dd_Smes_g4_7: 5199085-5199146 [+] UCSC Ensembl
Seed GAGUAUU
Precursor
(pre-Mir +30nt flank)		 
GGUUUUUUUGGGAAAGUAAUUUUAAUAUUUUGAGUAUUUUUUCGUAUACCGAACAGAUCAUCGUUGACUUUCGGUAACGAAGAAUACUUGGAAUUGAGAAAUUUAUUCGUCGAUGAACAUGA
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Structure
        10          20        30        40        50        60 
GGUUUUUUUGGGAAAGU--|     AAU    UG         U   A       CAGAUCA 
                   AAUUUU   AUUU  AGUAUUUUU CGU UACCGAA       U
                   UUAAAG   UAAG  UCAUAAGAA GCA AUGGCUU       C
AGUACAAGUAGCUGCUUAU^     AGU    GU         -   -       UCAGUUG 
120       110       100        90        80          70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-12-P11_5p
mirBase accessionMIMAT0011251
Sequence 
0- UGAGUAUUUUUUCGUAUACCGAA -23
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Co-mature sequence

Sme-Mir-12-P11_3p
mirBase accessionMIMAT0012149
Sequence 
41- CGGUAACGAAGAAUACUUGGA -62
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