Mir-12

MirGeneDB ID

Bpl-Mir-12

Family name

MIR-12 (all species)

Species

Monogonont Rotifer 1 (Brachionus plicatilis)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-12 Aga-Mir-12 Agr-Mir-12 Ava-Mir-12 Bge-Mir-12 Bko-Mir-12 Csc-Mir-12 Cte-Mir-12 Dan-Mir-12 Dgr-Mir-12 Dlo-Mir-12 Dma-Mir-12 Dme-Mir-12 Dmo-Mir-12 Dpu-Mir-12 Dsi-Mir-12 Eba-Mir-12 Efe-Mir-12-P1 Efe-Mir-12-P2 Egr-Mir-12 Esc-Mir-12 Gpa-Mir-12 Gsp-Mir-12 Hme-Mir-12 Hru-Mir-12 Isc-Mir-12 Lan-Mir-12-P3 Lan-Mir-12-P4 Lgi-Mir-12 Lhy-Mir-12 Llo-Mir-12 Lpo-Mir-12-P5 Lpo-Mir-12-P6 Lpo-Mir-12-P7 Lpo-Mir-12-P8 Mgi-Mir-12 Mom-Mir-12 Npo-Mir-12 Ofu-Mir-12 Ovu-Mir-12 Pau-Mir-12 Pca-Mir-12-P12 Pca-Mir-12-P13 Pcr-Mir-12 Pdu-Mir-12 Pve-Mir-12 Rph-Mir-12 Sme-Mir-12-P9 Sme-Mir-12-P10 Sme-Mir-12-P11 Snu-Mir-12 Tca-Mir-12 Tur-Mir-12-P14 Tur-Mir-12-P15 War-Mir-12

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(Bpl_ASM1027981)

QEOQ01000141.1: 556006-556066 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-12)

Mir-216-P2 QEOQ01000141.1: 555888-555952 [+] Ensembl
Mir-12 QEOQ01000141.1: 556006-556066 [+] Ensembl

Seed

GAGUAUU

Precursor
(pre-Mir +30nt flank)

UUUUUACACACAGCAAAAAGCGAGAUACAUUGAGUAUUACAUCAGGUAUUGAAUGGUUUUUCAAUUUUCAGUAUCUAUGUAAAUACUCACUCUACCUGCUUUUAGACAUUUCAUCUAAAAA

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Structure

        10           20        30         40        50          
UUUUUACACACAGCAAA---|   G  A  CAU        -    C          UGGUUU 
                    AAGC AG UA   UGAGUAUU ACAU AGGUAUUGAA      \
                    UUCG UC AU   ACUCAUAA UGUA UCUAUGACUU      U
AAAAAUCUACUUUACAGAUU^   -  C  CUC        A    -          UUAACU 
 .       110       100         90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Bpl-Mir-12_5p

mirBase accession

None

Sequence

0- UGAGUAUUACAUCAGGUAUUGAA -23

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Star sequence

Bpl-Mir-12_3p* (predicted)

mirBase accession

None

Sequence

38- CAGUAUCUAUGUAAAUACUCACU -61

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