MirGeneDB ID | Lpo-Mir-12-P5 |
Family name |
MIR-12 (all species) |
Seed |
GAGUAUU |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-12-P6
Lpo-Mir-12-P7
Lpo-Mir-12-P8
|
Orthologues |
Aae-Mir-12
Bge-Mir-12
Bpl-Mir-12
Cgi-Mir-12
Csc-Mir-12
Cte-Mir-12
Dan-Mir-12
Dma-Mir-12
Dme-Mir-12
Dmo-Mir-12
Dpu-Mir-12
Dsi-Mir-12
Esc-Mir-12
Hme-Mir-12
Isc-Mir-12
Lgi-Mir-12
Npo-Mir-12
Ovu-Mir-12
Tca-Mir-12
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013668423.1: 42459-42516 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCAAAGCGUGAUGGGAUAGCAUCCAGUGAAUGAGUAUUACAUCAGGUACUGGUGUUUCAUUAUAACCAGUACAUGUGUGAUAUUCGUCCACUGUACGCUACAUGCUUCGGUUGGAACC
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAAAGCGUGAUGGGAU--| AUC A CAG GUUUC
AGC CAGUG AUGAGUAUUACAU GUACUGGU \
UCG GUCAC UGCUUAUAGUGUG CAUGACCA A
CCAAGGUUGGCUUCGUACA^ CAU C UA- AUAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Lpo-Mir-12-P5_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUACAUCAGGUACUGGU -23
Get sequence
|
Star sequence |
Lpo-Mir-12-P5_3p* |
mirBase accession | None |
Sequence |
36- CAGUACAUGUGUGAUAUUCGUC -58
Get sequence
|