MirGeneDB 2.1

MirGeneDB ID

Dan-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-12
Paralogues
Orthologues Aae-Mir-12  Bge-Mir-12  Bpl-Mir-12  Cgi-Mir-12  Csc-Mir-12  Cte-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Esc-Mir-12  Hme-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Npo-Mir-12  Ovu-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Tca-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Dana_caf1)
scaffold_12929: 2898590-2898653 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12)
Mir-12 scaffold_12929: 2898590-2898653 [-] Ensembl
Mir-216-P2 scaffold_12929: 2899119-2899186 [-] Ensembl
Mir-216-P1 scaffold_12929: 2900402-2900470 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AACACACUCGACAACUGGCGUCUGUACGGCUGAGUAUUACAUCAGGUACUGGUGUGCCUUUAAUCCAACAACCAGUACUUAUGUCAUACUACGCCGUGCACCGAUCGCACUAACCGCAUGCCUC
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Structure
        10           20        30        40        50        60  
AACACACUCGACAACUGG---| UC        UG     U    C          GUGCCUUU 
                     CG  UGUACGGC  AGUAU ACAU AGGUACUGGU        \
                     GC  ACGUGCCG  UCAUA UGUA UUCAUGACCA        A
CUCCGUACGCCAAUCACGCUA^ C-        CA     C    -          ACAACCUA 
  120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Da
Mature sequence

Dan-Mir-12_5p

mirBase accessionMIMAT0008418
Sequence
0- UGAGUAUUACAUCAGGUACUGGU -23
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Star sequence

Dan-Mir-12_3p*

mirBase accessionNone
Sequence
42- CAGUACUUAUGUCAUACUACGC -64
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