MirGeneDB 2.1

MirGeneDB ID

Dpu-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-12
Paralogues
Orthologues Aae-Mir-12  Bge-Mir-12  Bpl-Mir-12  Cgi-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dsi-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Esc-Mir-12  Hme-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Npo-Mir-12  Ovu-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Tca-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_1: 1847845-1847905 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12)
Mir-12 DAPPUscaffold_1: 1847845-1847905 [-] Ensembl
Mir-216-P1 DAPPUscaffold_1: 1848726-1848812 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAUAUGCUCGAUUUUGGUGUUUCCGUCCGUGAGUAUUACAUCAGGUACUGGUUGUAUGUGCAUGAUACCAGUACCAUUGUAACACUCUCAACGGUCAACAUUUCUGUCAACAUUUCUCUG
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Structure
        10          20         30        40        50        60
UUAUAUGCUCGAUUUUG--     U-|   CCGU    A     UCA         UGUAUG 
                   GUGUU  CCGU    GAGU UUACA   GGUACUGGU      U
                   UACAA  GGCA    CUCA AAUGU   CCAUGACCA      G
GUCUCUUUACAACUGUCUU     CU^   ACU-    C     UA-         UAGUAC 
 .       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Dpu-Mir-12_5p

mirBase accessionMIMAT0012638
Sequence
0- UGAGUAUUACAUCAGGUACUGGU -23
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Star sequence

Dpu-Mir-12_3p*

mirBase accessionNone
Sequence
39- CAGUACCAUUGUAACACUCUCA -61
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