MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-12-P8

Family name MIR-12 (all species)
Seed GAGUAUU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7 
Orthologues Aae-Mir-12  Bge-Mir-12  Bpl-Mir-12  Cgi-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Esc-Mir-12  Hme-Mir-12  Isc-Mir-12  Lgi-Mir-12  Npo-Mir-12  Ovu-Mir-12  Tca-Mir-12 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013742680.1: 788-843 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCAAGGCGUGAUGGAAUAGCAGCCAGGAUUUGAGUAUUGCAUCAGGUACUGGUAGUUUCAUAACCAGUAUUUGUGUGAUACUCAACCUCUGUCUGCAGCACACGUCGAUUGAGACU
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Structure
        10          20        30        40        50        
CCAAGGCGUGAUGGAAUA--|   C    AU        UG  U           AGUU 
                    GCAG CAGG  UUGAGUAU  CA CAGGUACUGGU    \
                    CGUC GUCU  AACUCAUA  GU GUUUAUGACCA    U
UCAGAGUUAGCUGCACACGA^   U    CC        GU  -           AUAC 
    110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Mature sequence

Lpo-Mir-12-P8_5p

mirBase accessionNone
Sequence
0- UGAGUAUUGCAUCAGGUACUGGU -23
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Star sequence

Lpo-Mir-12-P8_3p* (predicted)

mirBase accessionNone
Sequence
34- CAGUAUUUGUGUGAUACUCAAC -56
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