MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-12

Family name MIR-12 (all species)
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pca-Mir-12-P12  Pca-Mir-12-P13  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Snu-Mir-12  Tca-Mir-12  Tur-Mir-12-P14  Tur-Mir-12-P15  War-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046176.1: 6126792-6126852 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-12)		 Mir-216-P1 NC_046176.1: 6125840-6125925 [+] Ensembl
Mir-216-P2 NC_046176.1: 6126328-6126441 [+] Ensembl
Mir-12 NC_046176.1: 6126792-6126852 [+] Ensembl
Mir-87-o5b NC_046176.1: 6157168-6157231 [-] Ensembl
Mir-87-o5a NC_046176.1: 6157349-6157434 [-] Ensembl
Seed GAGUAUU
Precursor
(pre-Mir +30nt flank)		 
UCACACCCUUGAUUUUGGUAUUCCCGUCCGUGAGUAUUACAUCAGGUACUGGUUGUAUGUGCAUGGUACCAGUACCAUUGUAACACUCUCACCGGGAAUACCUCGCCGUCUUUGUCCAAAA
Get precursor sequence
Structure
        10           20        30        40        50        60
UCACACCCUUGAUUUUG---|        UCCGU    A     UCA         UGUAUG 
                    GUAUUCCCG     GAGU UUACA   GGUACUGGU      U
                    CAUAAGGGC     CUCA AAUGU   CCAUGACCA      G
AAAACCUGUUUCUGCCGCUC^        CACU-    C     UA-         UGGUAC 
 .       110       100        90         80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-12_5p
mirBase accessionNone
Sequence 
0- UGAGUAUUACAUCAGGUACUGGU -23
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Star sequence

Dma-Mir-12_3p*
mirBase accessionNone
Sequence 
39- CAGUACCAUUGUAACACUCUCA -61
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