Mir-12

MirGeneDB ID

Ava-Mir-12

Family name

MIR-12 (all species)

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-12 Aga-Mir-12 Agr-Mir-12 Bge-Mir-12 Bko-Mir-12 Bpl-Mir-12 Csc-Mir-12 Cte-Mir-12 Dan-Mir-12 Dgr-Mir-12 Dlo-Mir-12 Dma-Mir-12 Dme-Mir-12 Dmo-Mir-12 Dpu-Mir-12 Dsi-Mir-12 Eba-Mir-12 Efe-Mir-12-P1 Efe-Mir-12-P2 Egr-Mir-12 Esc-Mir-12 Gpa-Mir-12 Gsp-Mir-12 Hme-Mir-12 Hru-Mir-12 Isc-Mir-12 Lan-Mir-12-P3 Lan-Mir-12-P4 Lgi-Mir-12 Lhy-Mir-12 Llo-Mir-12 Lpo-Mir-12-P5 Lpo-Mir-12-P6 Lpo-Mir-12-P7 Lpo-Mir-12-P8 Mgi-Mir-12 Mom-Mir-12 Npo-Mir-12 Ofu-Mir-12 Ovu-Mir-12 Pau-Mir-12 Pca-Mir-12-P12 Pca-Mir-12-P13 Pcr-Mir-12 Pdu-Mir-12 Pve-Mir-12 Rph-Mir-12 Sme-Mir-12-P9 Sme-Mir-12-P10 Sme-Mir-12-P11 Snu-Mir-12 Tca-Mir-12 Tur-Mir-12-P14 Tur-Mir-12-P15 War-Mir-12

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075497.1: 11031363-11031424 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-12)

Mir-12 CP075497.1: 11031363-11031424 [-] Ensembl
Mir-216-P2 CP075497.1: 11031484-11031546 [-] Ensembl

Seed

GAGUAUU

Precursor
(pre-Mir +30nt flank)

UCAUUUAAACAUAUGAAGUGGUCUUUGAUUUGAGUAUUGCACUUGGUAUUGGCUUGAAUAUUCAAUUGACAAUGCCGGUUGAAAUACUCUCAUCACACCAUAAUAUUGUCUAUUUAUUGUUU

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Structure

        10            20        30        40        50        60
UCAUUUAAACAUAUGAA----|    CUU    UU       G  C         GCUUGAAU 
                     GUGGU   UGAU  GAGUAUU CA UUGGUAUUG        A
                     UACCA   ACUA  CUCAUAA GU GGCCGUAAC        U
UUUGUUAUUUAUCUGUUAUAA^    C--    CU       A  U         AGUUAACU 
120       110       100          90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To	To

Mature sequence

Ava-Mir-12_5p

mirBase accession

None

Sequence

0- UGAGUAUUGCACUUGGUAUUGGC -23

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Star sequence

Ava-Mir-12_3p*

mirBase accession

None

Sequence

39- CAAUGCCGGUUGAAAUACUCUCA -62

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