MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-12
Paralogues
Orthologues Aae-Mir-12  Bge-Mir-12  Bpl-Mir-12  Cgi-Mir-12  Csc-Mir-12  Dan-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Esc-Mir-12  Hme-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Npo-Mir-12  Ovu-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Tca-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_192: 33843-33902 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12)
Mir-12 CAPTEscaffold_192: 33843-33902 [-] Ensembl
Mir-216-P2d CAPTEscaffold_192: 33996-34066 [-] Ensembl
Mir-216-P1 CAPTEscaffold_192: 34362-34430 [-] Ensembl
Mir-216-P2c CAPTEscaffold_192: 34755-34815 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCGUUUGGUGGAAGUGGCGGUCAGAGCCUGAGUAUUACAUCAGGUACUGAGUACAAGCACGAAAUCAGGGCCUGCUGAAAUACUCGCUCUCUGUCAGCACUAAUCAACUAACAAGUCU
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Structure
        10          20        30        40        50         
UCUCGUUUGGUGGAAGUG--| GGU     CC        A  U    UA    GUACAA 
                    GC   CAGAG  UGAGUAUU CA CAGG  CUGA      G
                    CG   GUCUC  GCUCAUAA GU GUCC  GACU      C
UCUGAACAAUCAACUAAUCA^ ACU     UC        A  C    GG    AAAGCA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cte-Mir-12_5p

mirBase accessionMIMAT0009512
Sequence
0- UGAGUAUUACAUCAGGUACUGA -22
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Star sequence

Cte-Mir-12_3p* (predicted)

mirBase accessionNone
Sequence
38- AGGGCCUGCUGAAAUACUCGCU -60
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