MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-12

Family name MIR-12 (all species)
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-12
Paralogues
Orthologues Aae-Mir-12  Aga-Mir-12  Agr-Mir-12  Ava-Mir-12  Bge-Mir-12  Bko-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dgr-Mir-12  Dlo-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Eba-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Egr-Mir-12  Esc-Mir-12  Gpa-Mir-12  Gsp-Mir-12  Hme-Mir-12  Hru-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lhy-Mir-12  Llo-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Mgi-Mir-12  Mom-Mir-12  Npo-Mir-12  Ofu-Mir-12  Ovu-Mir-12  Pau-Mir-12  Pca-Mir-12-P12  Pca-Mir-12-P13  Pcr-Mir-12  Pdu-Mir-12  Pve-Mir-12  Rph-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Snu-Mir-12  Tca-Mir-12  Tur-Mir-12-P14  Tur-Mir-12-P15  War-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609836.1: 71440117-71440176 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-12)		 Mir-216-P2 NW_024609836.1: 71439542-71439601 [+] Ensembl
Mir-12 NW_024609836.1: 71440117-71440176 [+] Ensembl
Seed GAGUAUU
Precursor
(pre-Mir +30nt flank)		 
CGGCCACGGCGAUCGCGUUGGGGCUGGGACUGAGUAUUACAUCAGGUACUGGUCUGGUUGCUGGGUACCAGUAUCUGUGUGAUAUUCACCCCUCGCCCCGGCUAAACUGCGAGCUUCAAG
Get precursor sequence
Structure
        10          20        30        40        50          
CGGCCACGGCGAUCGCG--|      U   AC           U           CUGGUU 
                   UUGGGGC GGG  UGAGUAUUACA CAGGUACUGGU      \
                   GGCCCCG UCC  ACUUAUAGUGU GUCUAUGACCA      G
GAACUUCGAGCGUCAAAUC^      C   CC           -           UGGGUC 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Mature sequence

Isc-Mir-12_5p
mirBase accessionMIMAT0012684
Sequence 
0- UGAGUAUUACAUCAGGUACUGGU -23
Get sequence
Star sequence

Isc-Mir-12_3p*
mirBase accessionNone
Sequence 
38- CAGUAUCUGUGUGAUAUUCACC -60
Get sequence