MirGeneDB 2.1

64 Ixodes scapularis microRNA genes
Sort by genome coordinates Motifs Tissue expression
 +
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC Al Mi Mi Mi Sa Sa Sa Sa To
Isc-Bantam-P9a isc-bantam BANTAM GAGAUCA None MIMAT0012679 DS616556 1196 1256 - I. scapularis Protostomia No
Isc-Bantam-P9b isc-bantam BANTAM GAGAUCA None MIMAT0012679 DS612599 38790 38850 - I. scapularis Protostomia No
Isc-Iab-4 isc-mir-iab-4 IAB-4 CGUAUAC MIMAT0018921 None DS891538 738929 738986 - Arthropoda Arthropoda Unknown 1
Isc-Let-7 isc-let-7 LET-7 GAGGUAG MIMAT0012680 None 1145246679 621 692 + Bilateria Bilateria No 1
Isc-Mir-1 isc-mir-1 MIR-1 GGAAUGU None MIMAT0012681 DS811420 416302 416365 + Bilateria Bilateria No 1 1
Isc-Mir-2-P1 isc-mir-2b MIR-2 AUCACAG None MIMAT0012697 DS799611 45564 45628 - Arthropoda Protostomia No 1
Isc-Mir-2-P3 None MIR-2 CAUCAAA None None DS799611 45337 45397 - Arthropoda Protostomia No 1
Isc-Mir-2-P4 isc-mir-2a MIR-2 AUCACAG None MIMAT0012696 DS799611 45175 45234 - Arthropoda Protostomia No 1 1
Isc-Mir-7 isc-mir-7 MIR-7 GGAAGAC MIMAT0012702 None DS629750 8363 8423 - Bilateria Bilateria No
Isc-Mir-8 isc-mir-8 MIR-8 AAUACUG None MIMAT0012706 DS755496 12166 12224 - Bilateria Bilateria No
Isc-Mir-9 isc-mir-79 MIR-9 CUUUGGU None MIMAT0012705 DS885551 436513 436572 + Bilateria Bilateria No 1 1
Isc-Mir-10-P1-v1 isc-mir-10 MIR-10 CCCUGUA MIMAT0012682 None DS891538 2780820 2780877 + Bilateria Eumetazoa No 1
Isc-Mir-10-P1-v2 isc-mir-10 MIR-10 ACCCUGU MIMAT0012682 None DS891538 2780819 2780878 + Bilateria Eumetazoa No 1
Isc-Mir-10-P2 isc-mir-100 MIR-10 ACCCGUA MIMAT0012683 None DS978597 252484 252545 - Bilateria Eumetazoa No
Isc-Mir-10-P3 None MIR-10 CCCUGAG None None DS978597 217030 217092 - Bilateria Eumetazoa No
Isc-Mir-10-P4 isc-mir-993 MIR-10 AAGCUCG None MIMAT0012709 DS891538 3285829 3285894 - Protostomia Eumetazoa No 1
Isc-Mir-12 isc-mir-12 MIR-12 GAGUAUU MIMAT0012684 None DS942119 45760 45819 - Protostomia Protostomia No 1
Isc-Mir-22-P2 None MIR-22 AGCUGCC None None DS740244 10264 10324 + Bilateria Bilateria No 1
Isc-Mir-29-P2 isc-mir-285 MIR-29 AGCACCA None MIMAT0012695 1308393763 757 817 + Bilateria Bilateria No 1
Isc-Mir-31 None MIR-31 GGCAAGA None None DS657582 482 543 + Bilateria Bilateria Unknown 1 1
Isc-Mir-33 None MIR-33 AGUGCUU None None DS727209 422215 422278 + Bilateria Bilateria No 1
Isc-Mir-34 None MIR-34 GGCAGUG None None None None None None Bilateria Bilateria No
Isc-Mir-36 None MIR-36 GGUGAAU None None DS634011 39150 39211 + Protostomia Protostomia Unknown 1 1
Isc-Mir-67 isc-mir-307 MIR-67 CUCACUC None MIMAT0012701 DS911299 1700309 1700372 - Protostomia Protostomia No 1
Isc-Mir-71 isc-mir-71 MIR-71 GAAAGAC MIMAT0012703 None DS799611 45706 45768 - Bilateria Bilateria No
Isc-Mir-76 None MIR-76 UCGUUGU None None DS732844 119430 119510 + Bilateria Bilateria No
Isc-Mir-87-P1 None MIR-87 UGAGCAA None None DS929532 41909 41969 - Protostomia Protostomia No 1 1
Isc-Mir-87-P2 isc-mir-87 MIR-87 UGAGCAA None MIMAT0012707 DS929532 41490 41548 - Protostomia Protostomia No 1
Isc-Mir-92 None MIR-92 AUUGCAC None None DS639501 298034 298092 - Bilateria Bilateria No 1
Isc-Mir-96-P1 isc-mir-96 MIR-96 UUGGCAC MIMAT0012708 None DS633978 113225 113285 + Bilateria Bilateria No
Isc-Mir-96-P2 None MIR-96 UUGGCAC None None DS633978 112831 112895 + Bilateria Bilateria Unknown
Isc-Mir-96-P3 isc-mir-263a MIR-96 AUGGCAC MIMAT0012692 None DS633978 93562 93624 + Bilateria Bilateria No 1
Isc-Mir-124 isc-mir-124 MIR-124 GUAUUCA None MIMAT0012685 DS840700 85166 85225 + Bilateria Bilateria No 1 1
Isc-Mir-133 isc-mir-133 MIR-133 UGGUCCC None MIMAT0012686 DS613658 228763 228842 - Bilateria Bilateria No 1
Isc-Mir-137 isc-mir-137 MIR-137 UAUUGCU None MIMAT0012687 DS847994 158297 158357 - Bilateria Bilateria No 1
Isc-Mir-153 isc-mir-153 MIR-153 UGCAUAG None MIMAT0012688 DS642248 1296661 1296718 - Bilateria Bilateria No 1 1
Isc-Mir-184 isc-mir-184 MIR-184 GGACGGA None MIMAT0012689 DS803854 589 649 - Bilateria Bilateria No 1
Isc-Mir-190 None MIR-190 CCAGGAG None None DS969850 171552 171609 + Bilateria Bilateria No 1
Isc-Mir-193-P1 isc-mir-5309 MIR-193 AAUGCCC None MIMAT0021379 DS745599 24809 24873 - Bilateria Bilateria No 1
Isc-Mir-210 None MIR-210 AGUCGCU None None DS908024 24478 24538 - Bilateria Bilateria No 1
Isc-Mir-216-P2 isc-mir-5307 MIR-216 AAUCUCA MIMAT0021377 None DS942119 46335 46394 - Bilateria Bilateria Unknown
Isc-Mir-219 isc-mir-219 MIR-219 GAUUGUC MIMAT0012690 None DS658596 21129 21187 - Bilateria Bilateria No 1
Isc-Mir-252-P1 isc-mir-252b MIR-252 UAAGUAG MIMAT0012691 None DS871365 29534 29593 + Bilateria Bilateria No 1
Isc-Mir-252-P2-v1 None MIR-252 UAAGUAC None None DS858616 253417 253478 - Bilateria Bilateria Unknown 1
Isc-Mir-252-P2-v2 None MIR-252 AAGUACU None None DS858616 253418 253477 - Bilateria Bilateria Unknown
Isc-Mir-275 isc-mir-275 MIR-275 CAGGUAC None MIMAT0012693 DS945001 243256 243318 - Arthropoda Arthropoda No
Isc-Mir-276 isc-mir-276 MIR-276 AGGAACU None MIMAT0018919 DS848078 34728 34788 - Arthropoda Arthropoda No 1
Isc-Mir-277 None MIR-277 AAAUGCA None None DS891538 51143 51205 - Protostomia Protostomia No 1
Isc-Mir-278 isc-mir-278 MIR-278 CGGAUGA None MIMAT0016930 DS841188 7213 7279 + Bilateria Bilateria No 1
Isc-Mir-279 isc-mir-279 MIR-279 GACUAGA None MIMAT0012694 DS634011 38521 38578 + Protostomia Protostomia No 1
Isc-Mir-281 None MIR-281 AGAGAGC None None 1716747454 337 400 + Bilateria Bilateria No 1
Isc-Mir-305 isc-mir-305 MIR-305 UUGUACU MIMAT0018920 None DS945001 228273 228337 - Ecdysozoa Ecdysozoa No 1
Isc-Mir-315 isc-mir-315 MIR-315 UUUGAUU MIMAT0012698 None DS711462 57353 57412 + Bilateria Bilateria No 1
Isc-Mir-317 isc-mir-317 MIR-317 GAACACA None MIMAT0012699 DS891538 57439 57502 - Protostomia Protostomia No 1 1
Isc-Mir-375 isc-mir-375 MIR-375 UUGUUCG None MIMAT0012700 DS966815 32765 32825 - Bilateria Bilateria No 1
Isc-Mir-750 isc-mir-750 MIR-750 CAGAUCU None MIMAT0012704 DS874548 52982 53046 - Protostomia Protostomia No
Isc-Mir-1175 None MIR-1175 GAGAUUC None None DS874548 51774 51835 - Protostomia Protostomia No 1
Isc-Mir-1993 isc-mir-1993 MIR-1993 AUUAUGC None MIMAT0016929 DS862055 112 174 + Protostomia Protostomia No 1
Isc-Mir-2001 isc-mir-2001 MIR-2001 UGUGACC MIMAT0009721 None DS758004 38916 38977 - Bilateria Bilateria No 1
Isc-Mir-3931 isc-mir-3931 MIR-3931 ACUUUGA None MIMAT0021380 DS763086 296464 296522 - Chelicerata Chelicerata No 1 1
Isc-Mir-5305 isc-mir-5305 MIR-5305 GGGCUUG None MIMAT0021375 DS696092 157406 157465 + Chelicerata Chelicerata No
Isc-Mir-5308 isc-mir-5308 MIR-5308 CUGUGCU MIMAT0021378 None DS911923 134637 134695 - I. scapularis I. scapularis No 1
Isc-Mir-5315 isc-mir-5315 MIR-5315 ACACAAC MIMAT0021386 None DS734036 1283508 1283566 + I. scapularis I. scapularis No 1 1
Isc-Novel-1 None ISC-NOVEL-1 GUGGUCA None None DS834826 12638 12699 + I. scapularis I. scapularis Unknown 1 1

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix